Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21293 and SM_b21294 are separated by 213 nucleotides SM_b21294 and SM_b21295 are separated by 123 nucleotides SM_b21295 and SM_b21296 are separated by 270 nucleotides
SM_b21293: SM_b21293 - guanine deaminase, at 869,392 to 870,735
_b21293
SM_b21294: SM_b21294 - Hsp20 family heat-shock protein, at 870,949 to 871,455
_b21294
SM_b21295: SM_b21295 - Hsp20 family heat-shock protein, at 871,579 to 872,163
_b21295
SM_b21296: SM_b21296 - hypothetical protein, at 872,434 to 872,739
_b21296
Position (kb) 870
871
872 Strain fitness (log2 ratio) -2
-1
0
1
2 at 869.950 kb on - strand, within SM_b21293 at 869.984 kb on - strand, within SM_b21293 at 869.984 kb on - strand, within SM_b21293 at 870.070 kb on + strand, within SM_b21293 at 870.070 kb on + strand, within SM_b21293 at 870.071 kb on - strand, within SM_b21293 at 870.145 kb on + strand, within SM_b21293 at 870.146 kb on - strand, within SM_b21293 at 870.157 kb on + strand, within SM_b21293 at 870.157 kb on + strand, within SM_b21293 at 870.158 kb on - strand, within SM_b21293 at 870.158 kb on - strand, within SM_b21293 at 870.158 kb on - strand, within SM_b21293 at 870.158 kb on - strand, within SM_b21293 at 870.167 kb on - strand, within SM_b21293 at 870.227 kb on + strand, within SM_b21293 at 870.228 kb on - strand, within SM_b21293 at 870.383 kb on + strand, within SM_b21293 at 870.384 kb on - strand, within SM_b21293 at 870.403 kb on + strand, within SM_b21293 at 870.404 kb on - strand, within SM_b21293 at 870.404 kb on - strand, within SM_b21293 at 870.404 kb on - strand, within SM_b21293 at 870.454 kb on + strand, within SM_b21293 at 870.454 kb on + strand, within SM_b21293 at 870.455 kb on - strand, within SM_b21293 at 870.656 kb on + strand at 870.657 kb on - strand at 870.658 kb on + strand at 870.658 kb on + strand at 870.658 kb on + strand at 870.658 kb on + strand at 870.658 kb on + strand at 870.658 kb on + strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.659 kb on - strand at 870.734 kb on - strand at 870.737 kb on + strand at 870.738 kb on - strand at 870.738 kb on - strand at 870.738 kb on - strand at 870.738 kb on - strand at 870.765 kb on + strand at 870.766 kb on - strand at 870.797 kb on + strand at 870.798 kb on - strand at 870.798 kb on - strand at 870.947 kb on + strand at 870.951 kb on - strand at 871.068 kb on - strand, within SM_b21294 at 871.100 kb on + strand, within SM_b21294 at 871.101 kb on - strand, within SM_b21294 at 871.397 kb on + strand, within SM_b21294 at 871.397 kb on + strand, within SM_b21294 at 871.397 kb on + strand, within SM_b21294 at 871.398 kb on - strand, within SM_b21294 at 871.447 kb on + strand at 871.447 kb on + strand at 871.448 kb on - strand at 871.448 kb on - strand at 871.448 kb on - strand at 871.494 kb on + strand at 871.567 kb on - strand at 871.648 kb on + strand, within SM_b21295 at 871.648 kb on + strand, within SM_b21295 at 871.648 kb on + strand, within SM_b21295 at 871.649 kb on - strand, within SM_b21295 at 871.649 kb on - strand, within SM_b21295 at 871.742 kb on - strand, within SM_b21295 at 871.796 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 872.059 kb on - strand, within SM_b21295 at 872.157 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.302 kb on + strand at 872.302 kb on + strand at 872.345 kb on + strand at 872.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 869,950 - SM_b21293 0.42 +0.6 869,984 - SM_b21293 0.44 +0.5 869,984 - SM_b21293 0.44 +0.6 870,070 + SM_b21293 0.50 -0.9 870,070 + SM_b21293 0.50 +0.0 870,071 - SM_b21293 0.51 +0.7 870,145 + SM_b21293 0.56 -0.4 870,146 - SM_b21293 0.56 -0.3 870,157 + SM_b21293 0.57 +0.0 870,157 + SM_b21293 0.57 +0.9 870,158 - SM_b21293 0.57 -0.1 870,158 - SM_b21293 0.57 -0.9 870,158 - SM_b21293 0.57 -0.6 870,158 - SM_b21293 0.57 +0.1 870,167 - SM_b21293 0.58 +2.4 870,227 + SM_b21293 0.62 +0.3 870,228 - SM_b21293 0.62 -1.4 870,383 + SM_b21293 0.74 -0.3 870,384 - SM_b21293 0.74 +1.3 870,403 + SM_b21293 0.75 -1.1 870,404 - SM_b21293 0.75 -0.3 870,404 - SM_b21293 0.75 -0.1 870,404 - SM_b21293 0.75 +1.0 870,454 + SM_b21293 0.79 -0.5 870,454 + SM_b21293 0.79 +0.6 870,455 - SM_b21293 0.79 -0.2 870,656 + +0.5 870,657 - -1.9 870,658 + +0.9 870,658 + +1.8 870,658 + -2.0 870,658 + +0.5 870,658 + -2.0 870,658 + +1.0 870,659 - +0.7 870,659 - -0.1 870,659 - +1.7 870,659 - -1.6 870,659 - -1.2 870,659 - +0.1 870,659 - +0.3 870,659 - +0.2 870,659 - +0.6 870,659 - -0.0 870,734 - -0.6 870,737 + -0.2 870,738 - -1.1 870,738 - -0.3 870,738 - +0.4 870,738 - -0.6 870,765 + +1.4 870,766 - -1.9 870,797 + -1.6 870,798 - -0.4 870,798 - -1.2 870,947 + -0.3 870,951 - +1.4 871,068 - SM_b21294 0.23 +1.6 871,100 + SM_b21294 0.30 -1.6 871,101 - SM_b21294 0.30 +0.3 871,397 + SM_b21294 0.88 -0.2 871,397 + SM_b21294 0.88 +0.7 871,397 + SM_b21294 0.88 +0.7 871,398 - SM_b21294 0.89 +0.2 871,447 + +2.3 871,447 + +0.8 871,448 - -2.2 871,448 - +1.2 871,448 - +1.7 871,494 + +1.4 871,567 - +0.6 871,648 + SM_b21295 0.12 -0.2 871,648 + SM_b21295 0.12 -1.1 871,648 + SM_b21295 0.12 +0.2 871,649 - SM_b21295 0.12 +0.4 871,649 - SM_b21295 0.12 +0.3 871,742 - SM_b21295 0.28 +1.2 871,796 + SM_b21295 0.37 +1.1 871,802 + SM_b21295 0.38 +1.6 871,802 + SM_b21295 0.38 +0.5 872,059 - SM_b21295 0.82 -1.7 872,157 + +0.7 872,258 + +0.2 872,258 + -0.2 872,258 + -1.6 872,302 + -0.2 872,302 + -0.1 872,345 + +1.2 872,345 + +0.1
Or see this region's nucleotide sequence