Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20987

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20986 and SM_b20987 are separated by 22 nucleotidesSM_b20987 and SM_b20988 are separated by 24 nucleotides SM_b20986: SM_b20986 - Nitrate reductase (EC 1.7.99.4) (from data), at 1,218,112 to 1,220,769 _b20986 SM_b20987: SM_b20987 - siroheme synthase, at 1,220,792 to 1,221,874 _b20987 SM_b20988: SM_b20988 - hypothetical protein, at 1,221,899 to 1,222,384 _b20988 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1219.836 kb on + strand, within SM_b20986at 1219.836 kb on + strand, within SM_b20986at 1219.837 kb on - strand, within SM_b20986at 1219.837 kb on - strand, within SM_b20986at 1219.890 kb on + strand, within SM_b20986at 1219.890 kb on + strand, within SM_b20986at 1219.891 kb on - strand, within SM_b20986at 1219.891 kb on - strand, within SM_b20986at 1220.218 kb on + strand, within SM_b20986at 1220.242 kb on - strand, within SM_b20986at 1220.394 kb on + strand, within SM_b20986at 1220.395 kb on - strand, within SM_b20986at 1220.455 kb on - strand, within SM_b20986at 1220.553 kb on - strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.739 kb on - strandat 1220.921 kb on + strand, within SM_b20987at 1220.922 kb on - strand, within SM_b20987at 1221.408 kb on + strand, within SM_b20987at 1221.408 kb on + strand, within SM_b20987at 1221.977 kb on + strand, within SM_b20988at 1221.977 kb on + strand, within SM_b20988at 1221.978 kb on - strand, within SM_b20988at 1221.978 kb on - strand, within SM_b20988at 1221.978 kb on - strand, within SM_b20988at 1222.122 kb on + strand, within SM_b20988at 1222.122 kb on + strand, within SM_b20988at 1222.184 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.251 kb on + strand, within SM_b20988at 1222.252 kb on - strand, within SM_b20988at 1222.252 kb on - strand, within SM_b20988at 1222.252 kb on - strand, within SM_b20988at 1222.347 kb on + strandat 1222.348 kb on - strandat 1222.354 kb on - strandat 1222.472 kb on - strandat 1222.472 kb on - strandat 1222.472 kb on - strandat 1222.587 kb on - strandat 1222.616 kb on + strandat 1222.617 kb on - strandat 1222.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,219,836 + SM_b20986 0.65 -0.3
1,219,836 + SM_b20986 0.65 +0.5
1,219,837 - SM_b20986 0.65 +0.4
1,219,837 - SM_b20986 0.65 +0.2
1,219,890 + SM_b20986 0.67 +1.1
1,219,890 + SM_b20986 0.67 +0.4
1,219,891 - SM_b20986 0.67 -1.5
1,219,891 - SM_b20986 0.67 +0.3
1,220,218 + SM_b20986 0.79 +0.4
1,220,242 - SM_b20986 0.80 +0.7
1,220,394 + SM_b20986 0.86 -1.2
1,220,395 - SM_b20986 0.86 +0.6
1,220,455 - SM_b20986 0.88 -1.2
1,220,553 - +0.1
1,220,738 + -0.2
1,220,738 + +0.5
1,220,738 + +0.2
1,220,738 + +0.6
1,220,738 + +1.0
1,220,739 - -0.6
1,220,921 + SM_b20987 0.12 +0.3
1,220,922 - SM_b20987 0.12 -1.9
1,221,408 + SM_b20987 0.57 -1.2
1,221,408 + SM_b20987 0.57 -1.3
1,221,977 + SM_b20988 0.16 +0.3
1,221,977 + SM_b20988 0.16 +0.5
1,221,978 - SM_b20988 0.16 +0.2
1,221,978 - SM_b20988 0.16 -0.3
1,221,978 - SM_b20988 0.16 +0.1
1,222,122 + SM_b20988 0.46 -0.1
1,222,122 + SM_b20988 0.46 +0.8
1,222,184 + SM_b20988 0.59 +0.3
1,222,251 + SM_b20988 0.72 +0.3
1,222,251 + SM_b20988 0.72 +1.5
1,222,251 + SM_b20988 0.72 +0.2
1,222,251 + SM_b20988 0.72 -0.3
1,222,251 + SM_b20988 0.72 -1.8
1,222,251 + SM_b20988 0.72 +0.4
1,222,252 - SM_b20988 0.73 -1.0
1,222,252 - SM_b20988 0.73 +0.7
1,222,252 - SM_b20988 0.73 -1.5
1,222,347 + +0.1
1,222,348 - +0.2
1,222,354 - +0.1
1,222,472 - -1.1
1,222,472 - -0.6
1,222,472 - +1.9
1,222,587 - -0.3
1,222,616 + -3.6
1,222,617 - +0.4
1,222,631 - -0.5

Or see this region's nucleotide sequence