Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20984 and SM_b20985 are separated by 3 nucleotides SM_b20985 and SM_b20986 are separated by 2 nucleotides SM_b20986 and SM_b20987 are separated by 22 nucleotides
SM_b20984: SM_b20984 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 1,215,305 to 1,217,767
_b20984
SM_b20985: SM_b20985 - nitrite reductase [NAD(P)H], small subunit protein, at 1,217,771 to 1,218,109
_b20985
SM_b20986: SM_b20986 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,218,112 to 1,220,769
_b20986
SM_b20987: SM_b20987 - siroheme synthase, at 1,220,792 to 1,221,874
_b20987
Position (kb)
1218
1219
1220
1221 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1217.509 kb on + strand, within SM_b20984 at 1217.509 kb on + strand, within SM_b20984 at 1217.510 kb on - strand, within SM_b20984 at 1217.531 kb on + strand at 1217.531 kb on + strand at 1217.532 kb on - strand at 1217.532 kb on - strand at 1217.532 kb on - strand at 1217.564 kb on + strand at 1217.765 kb on + strand at 1218.108 kb on - strand at 1218.143 kb on - strand at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.403 kb on + strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.404 kb on - strand, within SM_b20986 at 1218.433 kb on + strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.434 kb on - strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.436 kb on + strand, within SM_b20986 at 1218.437 kb on - strand, within SM_b20986 at 1218.481 kb on - strand, within SM_b20986 at 1218.565 kb on + strand, within SM_b20986 at 1218.638 kb on - strand, within SM_b20986 at 1218.820 kb on + strand, within SM_b20986 at 1218.820 kb on + strand, within SM_b20986 at 1218.820 kb on + strand, within SM_b20986 at 1218.822 kb on + strand, within SM_b20986 at 1218.822 kb on + strand, within SM_b20986 at 1218.822 kb on + strand, within SM_b20986 at 1218.823 kb on - strand, within SM_b20986 at 1218.973 kb on + strand, within SM_b20986 at 1218.975 kb on + strand, within SM_b20986 at 1218.975 kb on + strand, within SM_b20986 at 1218.976 kb on - strand, within SM_b20986 at 1218.976 kb on - strand, within SM_b20986 at 1218.976 kb on - strand, within SM_b20986 at 1218.976 kb on - strand, within SM_b20986 at 1219.137 kb on + strand, within SM_b20986 at 1219.137 kb on + strand, within SM_b20986 at 1219.137 kb on + strand, within SM_b20986 at 1219.152 kb on + strand, within SM_b20986 at 1219.187 kb on + strand, within SM_b20986 at 1219.389 kb on + strand, within SM_b20986 at 1219.693 kb on + strand, within SM_b20986 at 1219.693 kb on + strand, within SM_b20986 at 1219.777 kb on + strand, within SM_b20986 at 1219.836 kb on + strand, within SM_b20986 at 1219.836 kb on + strand, within SM_b20986 at 1219.837 kb on - strand, within SM_b20986 at 1219.837 kb on - strand, within SM_b20986 at 1219.890 kb on + strand, within SM_b20986 at 1219.890 kb on + strand, within SM_b20986 at 1219.891 kb on - strand, within SM_b20986 at 1219.891 kb on - strand, within SM_b20986 at 1220.218 kb on + strand, within SM_b20986 at 1220.242 kb on - strand, within SM_b20986 at 1220.394 kb on + strand, within SM_b20986 at 1220.395 kb on - strand, within SM_b20986 at 1220.455 kb on - strand, within SM_b20986 at 1220.553 kb on - strand at 1220.738 kb on + strand at 1220.738 kb on + strand at 1220.738 kb on + strand at 1220.738 kb on + strand at 1220.738 kb on + strand at 1220.739 kb on - strand at 1220.921 kb on + strand, within SM_b20987 at 1220.922 kb on - strand, within SM_b20987 at 1221.408 kb on + strand, within SM_b20987 at 1221.408 kb on + strand, within SM_b20987
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 1,217,509 + SM_b20984 0.89 -1.2 1,217,509 + SM_b20984 0.89 +1.2 1,217,510 - SM_b20984 0.90 +0.0 1,217,531 + -0.0 1,217,531 + +0.3 1,217,532 - -0.9 1,217,532 - -0.3 1,217,532 - +0.0 1,217,564 + +0.4 1,217,765 + +0.1 1,218,108 - -1.2 1,218,143 - -1.2 1,218,403 + SM_b20986 0.11 -2.3 1,218,403 + SM_b20986 0.11 -0.1 1,218,403 + SM_b20986 0.11 -0.2 1,218,403 + SM_b20986 0.11 -0.3 1,218,404 - SM_b20986 0.11 +1.3 1,218,404 - SM_b20986 0.11 +0.8 1,218,404 - SM_b20986 0.11 +1.5 1,218,433 + SM_b20986 0.12 +1.0 1,218,434 - SM_b20986 0.12 +0.2 1,218,434 - SM_b20986 0.12 +2.1 1,218,434 - SM_b20986 0.12 -1.7 1,218,434 - SM_b20986 0.12 +0.2 1,218,434 - SM_b20986 0.12 +0.5 1,218,436 + SM_b20986 0.12 -3.0 1,218,436 + SM_b20986 0.12 +1.5 1,218,436 + SM_b20986 0.12 -0.4 1,218,436 + SM_b20986 0.12 -0.3 1,218,436 + SM_b20986 0.12 -1.4 1,218,436 + SM_b20986 0.12 +0.0 1,218,437 - SM_b20986 0.12 +0.9 1,218,481 - SM_b20986 0.14 +0.1 1,218,565 + SM_b20986 0.17 -1.2 1,218,638 - SM_b20986 0.20 +0.8 1,218,820 + SM_b20986 0.27 +0.3 1,218,820 + SM_b20986 0.27 -1.0 1,218,820 + SM_b20986 0.27 +0.0 1,218,822 + SM_b20986 0.27 +0.1 1,218,822 + SM_b20986 0.27 -0.5 1,218,822 + SM_b20986 0.27 +0.5 1,218,823 - SM_b20986 0.27 -2.6 1,218,973 + SM_b20986 0.32 +0.3 1,218,975 + SM_b20986 0.32 -0.2 1,218,975 + SM_b20986 0.32 +0.3 1,218,976 - SM_b20986 0.33 +0.2 1,218,976 - SM_b20986 0.33 -0.4 1,218,976 - SM_b20986 0.33 +1.7 1,218,976 - SM_b20986 0.33 -0.7 1,219,137 + SM_b20986 0.39 -0.5 1,219,137 + SM_b20986 0.39 -0.5 1,219,137 + SM_b20986 0.39 +0.7 1,219,152 + SM_b20986 0.39 -0.0 1,219,187 + SM_b20986 0.40 +0.5 1,219,389 + SM_b20986 0.48 -0.0 1,219,693 + SM_b20986 0.59 -1.2 1,219,693 + SM_b20986 0.59 +1.3 1,219,777 + SM_b20986 0.63 -1.7 1,219,836 + SM_b20986 0.65 -0.3 1,219,836 + SM_b20986 0.65 +0.5 1,219,837 - SM_b20986 0.65 +0.4 1,219,837 - SM_b20986 0.65 +0.2 1,219,890 + SM_b20986 0.67 +1.1 1,219,890 + SM_b20986 0.67 +0.4 1,219,891 - SM_b20986 0.67 -1.5 1,219,891 - SM_b20986 0.67 +0.3 1,220,218 + SM_b20986 0.79 +0.4 1,220,242 - SM_b20986 0.80 +0.7 1,220,394 + SM_b20986 0.86 -1.2 1,220,395 - SM_b20986 0.86 +0.6 1,220,455 - SM_b20986 0.88 -1.2 1,220,553 - +0.1 1,220,738 + -0.2 1,220,738 + +0.5 1,220,738 + +0.2 1,220,738 + +0.6 1,220,738 + +1.0 1,220,739 - -0.6 1,220,921 + SM_b20987 0.12 +0.3 1,220,922 - SM_b20987 0.12 -1.9 1,221,408 + SM_b20987 0.57 -1.2 1,221,408 + SM_b20987 0.57 -1.3
Or see this region's nucleotide sequence