Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20986

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20984 and SM_b20985 are separated by 3 nucleotidesSM_b20985 and SM_b20986 are separated by 2 nucleotidesSM_b20986 and SM_b20987 are separated by 22 nucleotides SM_b20984: SM_b20984 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 1,215,305 to 1,217,767 _b20984 SM_b20985: SM_b20985 - nitrite reductase [NAD(P)H], small subunit protein, at 1,217,771 to 1,218,109 _b20985 SM_b20986: SM_b20986 - Nitrate reductase (EC 1.7.99.4) (from data), at 1,218,112 to 1,220,769 _b20986 SM_b20987: SM_b20987 - siroheme synthase, at 1,220,792 to 1,221,874 _b20987 Position (kb) 1218 1219 1220 1221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1217.509 kb on + strand, within SM_b20984at 1217.509 kb on + strand, within SM_b20984at 1217.510 kb on - strand, within SM_b20984at 1217.531 kb on + strandat 1217.531 kb on + strandat 1217.532 kb on - strandat 1217.532 kb on - strandat 1217.532 kb on - strandat 1217.564 kb on + strandat 1217.765 kb on + strandat 1218.108 kb on - strandat 1218.143 kb on - strandat 1218.403 kb on + strand, within SM_b20986at 1218.403 kb on + strand, within SM_b20986at 1218.403 kb on + strand, within SM_b20986at 1218.403 kb on + strand, within SM_b20986at 1218.404 kb on - strand, within SM_b20986at 1218.404 kb on - strand, within SM_b20986at 1218.404 kb on - strand, within SM_b20986at 1218.433 kb on + strand, within SM_b20986at 1218.434 kb on - strand, within SM_b20986at 1218.434 kb on - strand, within SM_b20986at 1218.434 kb on - strand, within SM_b20986at 1218.434 kb on - strand, within SM_b20986at 1218.434 kb on - strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.436 kb on + strand, within SM_b20986at 1218.437 kb on - strand, within SM_b20986at 1218.481 kb on - strand, within SM_b20986at 1218.565 kb on + strand, within SM_b20986at 1218.638 kb on - strand, within SM_b20986at 1218.820 kb on + strand, within SM_b20986at 1218.820 kb on + strand, within SM_b20986at 1218.820 kb on + strand, within SM_b20986at 1218.822 kb on + strand, within SM_b20986at 1218.822 kb on + strand, within SM_b20986at 1218.822 kb on + strand, within SM_b20986at 1218.823 kb on - strand, within SM_b20986at 1218.973 kb on + strand, within SM_b20986at 1218.975 kb on + strand, within SM_b20986at 1218.975 kb on + strand, within SM_b20986at 1218.976 kb on - strand, within SM_b20986at 1218.976 kb on - strand, within SM_b20986at 1218.976 kb on - strand, within SM_b20986at 1218.976 kb on - strand, within SM_b20986at 1219.137 kb on + strand, within SM_b20986at 1219.137 kb on + strand, within SM_b20986at 1219.137 kb on + strand, within SM_b20986at 1219.152 kb on + strand, within SM_b20986at 1219.187 kb on + strand, within SM_b20986at 1219.389 kb on + strand, within SM_b20986at 1219.693 kb on + strand, within SM_b20986at 1219.693 kb on + strand, within SM_b20986at 1219.777 kb on + strand, within SM_b20986at 1219.836 kb on + strand, within SM_b20986at 1219.836 kb on + strand, within SM_b20986at 1219.837 kb on - strand, within SM_b20986at 1219.837 kb on - strand, within SM_b20986at 1219.890 kb on + strand, within SM_b20986at 1219.890 kb on + strand, within SM_b20986at 1219.891 kb on - strand, within SM_b20986at 1219.891 kb on - strand, within SM_b20986at 1220.218 kb on + strand, within SM_b20986at 1220.242 kb on - strand, within SM_b20986at 1220.394 kb on + strand, within SM_b20986at 1220.395 kb on - strand, within SM_b20986at 1220.455 kb on - strand, within SM_b20986at 1220.553 kb on - strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.738 kb on + strandat 1220.739 kb on - strandat 1220.921 kb on + strand, within SM_b20987at 1220.922 kb on - strand, within SM_b20987at 1221.408 kb on + strand, within SM_b20987at 1221.408 kb on + strand, within SM_b20987

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,217,509 + SM_b20984 0.89 -1.2
1,217,509 + SM_b20984 0.89 +1.2
1,217,510 - SM_b20984 0.90 +0.0
1,217,531 + -0.0
1,217,531 + +0.3
1,217,532 - -0.9
1,217,532 - -0.3
1,217,532 - +0.0
1,217,564 + +0.4
1,217,765 + +0.1
1,218,108 - -1.2
1,218,143 - -1.2
1,218,403 + SM_b20986 0.11 -2.3
1,218,403 + SM_b20986 0.11 -0.1
1,218,403 + SM_b20986 0.11 -0.2
1,218,403 + SM_b20986 0.11 -0.3
1,218,404 - SM_b20986 0.11 +1.3
1,218,404 - SM_b20986 0.11 +0.8
1,218,404 - SM_b20986 0.11 +1.5
1,218,433 + SM_b20986 0.12 +1.0
1,218,434 - SM_b20986 0.12 +0.2
1,218,434 - SM_b20986 0.12 +2.1
1,218,434 - SM_b20986 0.12 -1.7
1,218,434 - SM_b20986 0.12 +0.2
1,218,434 - SM_b20986 0.12 +0.5
1,218,436 + SM_b20986 0.12 -3.0
1,218,436 + SM_b20986 0.12 +1.5
1,218,436 + SM_b20986 0.12 -0.4
1,218,436 + SM_b20986 0.12 -0.3
1,218,436 + SM_b20986 0.12 -1.4
1,218,436 + SM_b20986 0.12 +0.0
1,218,437 - SM_b20986 0.12 +0.9
1,218,481 - SM_b20986 0.14 +0.1
1,218,565 + SM_b20986 0.17 -1.2
1,218,638 - SM_b20986 0.20 +0.8
1,218,820 + SM_b20986 0.27 +0.3
1,218,820 + SM_b20986 0.27 -1.0
1,218,820 + SM_b20986 0.27 +0.0
1,218,822 + SM_b20986 0.27 +0.1
1,218,822 + SM_b20986 0.27 -0.5
1,218,822 + SM_b20986 0.27 +0.5
1,218,823 - SM_b20986 0.27 -2.6
1,218,973 + SM_b20986 0.32 +0.3
1,218,975 + SM_b20986 0.32 -0.2
1,218,975 + SM_b20986 0.32 +0.3
1,218,976 - SM_b20986 0.33 +0.2
1,218,976 - SM_b20986 0.33 -0.4
1,218,976 - SM_b20986 0.33 +1.7
1,218,976 - SM_b20986 0.33 -0.7
1,219,137 + SM_b20986 0.39 -0.5
1,219,137 + SM_b20986 0.39 -0.5
1,219,137 + SM_b20986 0.39 +0.7
1,219,152 + SM_b20986 0.39 -0.0
1,219,187 + SM_b20986 0.40 +0.5
1,219,389 + SM_b20986 0.48 -0.0
1,219,693 + SM_b20986 0.59 -1.2
1,219,693 + SM_b20986 0.59 +1.3
1,219,777 + SM_b20986 0.63 -1.7
1,219,836 + SM_b20986 0.65 -0.3
1,219,836 + SM_b20986 0.65 +0.5
1,219,837 - SM_b20986 0.65 +0.4
1,219,837 - SM_b20986 0.65 +0.2
1,219,890 + SM_b20986 0.67 +1.1
1,219,890 + SM_b20986 0.67 +0.4
1,219,891 - SM_b20986 0.67 -1.5
1,219,891 - SM_b20986 0.67 +0.3
1,220,218 + SM_b20986 0.79 +0.4
1,220,242 - SM_b20986 0.80 +0.7
1,220,394 + SM_b20986 0.86 -1.2
1,220,395 - SM_b20986 0.86 +0.6
1,220,455 - SM_b20986 0.88 -1.2
1,220,553 - +0.1
1,220,738 + -0.2
1,220,738 + +0.5
1,220,738 + +0.2
1,220,738 + +0.6
1,220,738 + +1.0
1,220,739 - -0.6
1,220,921 + SM_b20987 0.12 +0.3
1,220,922 - SM_b20987 0.12 -1.9
1,221,408 + SM_b20987 0.57 -1.2
1,221,408 + SM_b20987 0.57 -1.3

Or see this region's nucleotide sequence