Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20807 and SM_b20808 overlap by 25 nucleotides SM_b20808 and SM_b20809 are separated by 236 nucleotides
SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519
_b20807
SM_b20808: SM_b20808 - hypothetical protein, at 593,495 to 594,271
_b20808
SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497
_b20809
Position (kb) 593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 592.495 kb on - strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.540 kb on - strand, within SM_b20807 at 592.551 kb on - strand, within SM_b20807 at 592.605 kb on + strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.671 kb on + strand, within SM_b20807 at 592.685 kb on + strand, within SM_b20807 at 592.686 kb on - strand, within SM_b20807 at 592.740 kb on - strand, within SM_b20807 at 592.839 kb on + strand, within SM_b20807 at 592.876 kb on + strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.924 kb on + strand, within SM_b20807 at 592.925 kb on - strand, within SM_b20807 at 592.939 kb on + strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 593.004 kb on + strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.360 kb on + strand at 593.457 kb on + strand at 593.484 kb on + strand at 593.484 kb on + strand at 593.497 kb on - strand at 593.498 kb on + strand at 593.703 kb on + strand, within SM_b20808 at 593.704 kb on - strand, within SM_b20808 at 593.772 kb on + strand, within SM_b20808 at 593.819 kb on - strand at 593.895 kb on + strand, within SM_b20808 at 593.895 kb on + strand, within SM_b20808 at 593.929 kb on - strand, within SM_b20808 at 593.941 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 594.160 kb on + strand, within SM_b20808 at 594.273 kb on + strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.288 kb on - strand at 594.338 kb on + strand at 594.372 kb on + strand at 594.473 kb on + strand at 594.515 kb on + strand at 594.516 kb on - strand at 594.521 kb on + strand at 594.522 kb on - strand at 594.522 kb on - strand at 594.533 kb on + strand at 594.534 kb on - strand at 594.552 kb on + strand at 594.553 kb on - strand at 594.624 kb on + strand, within SM_b20809 at 594.751 kb on + strand, within SM_b20809 at 594.751 kb on + strand, within SM_b20809 at 594.816 kb on + strand, within SM_b20809 at 594.816 kb on + strand, within SM_b20809 at 594.817 kb on - strand, within SM_b20809 at 594.860 kb on + strand, within SM_b20809 at 594.861 kb on - strand, within SM_b20809 at 594.861 kb on - strand, within SM_b20809 at 594.868 kb on + strand, within SM_b20809 at 594.918 kb on + strand, within SM_b20809 at 594.989 kb on + strand, within SM_b20809 at 595.043 kb on + strand, within SM_b20809 at 595.044 kb on - strand, within SM_b20809
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 592,495 - SM_b20807 0.37 +0.1 592,539 + SM_b20807 0.40 +0.1 592,539 + SM_b20807 0.40 -0.3 592,540 - SM_b20807 0.40 -2.3 592,551 - SM_b20807 0.41 -0.2 592,605 + SM_b20807 0.44 +0.7 592,606 - SM_b20807 0.44 -0.4 592,606 - SM_b20807 0.44 -1.0 592,671 + SM_b20807 0.48 +0.1 592,685 + SM_b20807 0.49 +1.3 592,686 - SM_b20807 0.49 +0.8 592,740 - SM_b20807 0.52 -3.0 592,839 + SM_b20807 0.58 -0.5 592,876 + SM_b20807 0.61 -1.7 592,922 - SM_b20807 0.63 -0.3 592,922 - SM_b20807 0.63 -0.4 592,924 + SM_b20807 0.64 -1.3 592,925 - SM_b20807 0.64 -0.6 592,939 + SM_b20807 0.65 -0.5 592,940 - SM_b20807 0.65 -2.0 592,940 - SM_b20807 0.65 -2.0 592,940 - SM_b20807 0.65 +0.0 593,004 + SM_b20807 0.68 -1.9 593,005 - SM_b20807 0.69 -0.5 593,005 - SM_b20807 0.69 -0.1 593,166 + SM_b20807 0.78 -0.4 593,166 + SM_b20807 0.78 +0.4 593,166 + SM_b20807 0.78 -1.3 593,360 + -0.5 593,457 + +0.2 593,484 + +0.2 593,484 + +0.6 593,497 - +0.4 593,498 + +1.8 593,703 + SM_b20808 0.27 +3.5 593,704 - SM_b20808 0.27 +3.3 593,772 + SM_b20808 0.36 +2.9 593,819 - +4.4 593,895 + SM_b20808 0.51 +2.8 593,895 + SM_b20808 0.51 +2.8 593,929 - SM_b20808 0.56 +3.0 593,941 + SM_b20808 0.57 +2.7 593,950 + SM_b20808 0.59 +3.3 593,950 + SM_b20808 0.59 +3.3 593,960 + SM_b20808 0.60 +3.7 593,960 + SM_b20808 0.60 +3.2 593,979 - SM_b20808 0.62 +3.5 593,979 - SM_b20808 0.62 +4.2 593,979 - SM_b20808 0.62 +3.3 593,979 - SM_b20808 0.62 +3.6 593,982 + SM_b20808 0.63 +2.9 593,982 + SM_b20808 0.63 +3.5 593,982 + SM_b20808 0.63 +3.2 593,982 + SM_b20808 0.63 +3.4 593,983 - SM_b20808 0.63 +4.0 593,983 - SM_b20808 0.63 +3.2 593,983 - SM_b20808 0.63 +3.4 593,983 - SM_b20808 0.63 +3.4 593,983 - SM_b20808 0.63 +3.5 594,160 + SM_b20808 0.86 +4.2 594,273 + +3.7 594,274 - -0.4 594,274 - +0.2 594,274 - -0.5 594,288 - -1.1 594,338 + -0.4 594,372 + +0.4 594,473 + -1.2 594,515 + -0.7 594,516 - -2.5 594,521 + -0.2 594,522 - -1.5 594,522 - +0.0 594,533 + -2.2 594,534 - -0.2 594,552 + -0.5 594,553 - -1.2 594,624 + SM_b20809 0.12 -0.1 594,751 + SM_b20809 0.25 -1.2 594,751 + SM_b20809 0.25 -1.3 594,816 + SM_b20809 0.31 -2.0 594,816 + SM_b20809 0.31 -0.4 594,817 - SM_b20809 0.31 -1.4 594,860 + SM_b20809 0.36 -0.9 594,861 - SM_b20809 0.36 -3.0 594,861 - SM_b20809 0.36 -0.9 594,868 + SM_b20809 0.36 +0.6 594,918 + SM_b20809 0.41 -1.0 594,989 + SM_b20809 0.49 +0.3 595,043 + SM_b20809 0.54 +0.2 595,044 - SM_b20809 0.54 -2.1
Or see this region's nucleotide sequence