Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20444 and SM_b20445 overlap by 1 nucleotides SM_b20445 and SM_b20446 are separated by 9 nucleotides
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.376 kb on - strand, within SM_b20444 at 455.481 kb on - strand, within SM_b20444 at 455.579 kb on + strand, within SM_b20444 at 455.580 kb on - strand, within SM_b20444 at 455.732 kb on - strand, within SM_b20444 at 456.238 kb on + strand at 456.239 kb on - strand at 456.239 kb on - strand at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445 at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.685 kb on - strand, within SM_b20446 at 457.829 kb on - strand, within SM_b20446 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 455,376 - SM_b20444 0.33 +1.4 455,481 - SM_b20444 0.41 -0.7 455,579 + SM_b20444 0.48 -1.6 455,580 - SM_b20444 0.48 +0.4 455,732 - SM_b20444 0.59 +0.4 456,238 + -0.3 456,239 - -0.3 456,239 - -1.1 456,461 - SM_b20445 0.14 +1.6 456,461 - SM_b20445 0.14 +0.1 456,461 - SM_b20445 0.14 +0.5 456,463 + SM_b20445 0.14 +0.2 456,509 + SM_b20445 0.19 +1.1 456,702 + SM_b20445 0.37 -1.1 456,702 + SM_b20445 0.37 -0.0 456,702 + SM_b20445 0.37 +1.1 456,702 + SM_b20445 0.37 -1.6 456,702 + SM_b20445 0.37 +0.4 456,848 + SM_b20445 0.51 +1.0 456,849 - SM_b20445 0.51 +0.3 457,021 + SM_b20445 0.67 +0.9 457,021 + SM_b20445 0.67 -0.9 457,082 + SM_b20445 0.73 -0.2 457,149 + SM_b20445 0.79 -0.2 457,150 - SM_b20445 0.79 +0.3 457,389 + +1.1 457,389 + -0.9 457,389 + -0.0 457,389 + -0.5 457,390 - -0.0 457,390 - -0.2 457,390 - +0.6 457,390 - -0.1 457,685 - SM_b20446 0.25 -0.1 457,829 - SM_b20446 0.37 +0.3 457,909 - SM_b20446 0.44 +0.2 457,978 + SM_b20446 0.49 +0.4 457,978 + SM_b20446 0.49 +0.4 457,978 + SM_b20446 0.49 +0.9 457,978 + SM_b20446 0.49 +1.4 457,978 + SM_b20446 0.49 +1.9 457,978 + SM_b20446 0.49 -0.1 457,979 - SM_b20446 0.49 +0.3 457,979 - SM_b20446 0.49 +0.0 458,140 + SM_b20446 0.63 -2.7 458,140 + SM_b20446 0.63 -0.2 458,300 + SM_b20446 0.76 +0.3 458,300 + SM_b20446 0.76 +0.3 458,301 - SM_b20446 0.76 +1.3 458,301 - SM_b20446 0.76 +1.4
Or see this region's nucleotide sequence