Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20340 and SM_b20341 are separated by 204 nucleotides SM_b20341 and SM_b20342 are separated by 386 nucleotides SM_b20342 and SM_b20343 are separated by 1 nucleotides SM_b20343 and SM_b20344 are separated by 276 nucleotides
SM_b20340: SM_b20340 - hypothetical protein, at 345,349 to 345,528
_b20340
SM_b20341: SM_b20341 - hypothetical protein, at 345,733 to 345,918
_b20341
SM_b20342: SM_b20342 - isoquinoline 1-oxidoreductase, at 346,305 to 348,518
_b20342
SM_b20343: SM_b20343 - isoquinoline 1-oxidoreductase, at 348,520 to 348,978
_b20343
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 345.496 kb on - strand, within SM_b20340 at 345.511 kb on + strand at 346.055 kb on + strand at 346.056 kb on - strand at 346.056 kb on - strand at 346.153 kb on - strand at 346.153 kb on - strand at 346.258 kb on - strand at 346.272 kb on - strand at 346.446 kb on - strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.489 kb on + strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.490 kb on - strand at 346.652 kb on + strand, within SM_b20342 at 346.655 kb on + strand, within SM_b20342 at 346.655 kb on + strand, within SM_b20342 at 346.984 kb on + strand, within SM_b20342 at 347.022 kb on + strand, within SM_b20342 at 347.022 kb on + strand, within SM_b20342 at 347.023 kb on - strand, within SM_b20342 at 347.143 kb on + strand, within SM_b20342 at 347.143 kb on + strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.144 kb on - strand, within SM_b20342 at 347.244 kb on + strand, within SM_b20342 at 347.245 kb on - strand, within SM_b20342 at 347.245 kb on - strand, within SM_b20342 at 347.569 kb on + strand, within SM_b20342 at 347.827 kb on + strand, within SM_b20342 at 347.828 kb on - strand at 347.828 kb on - strand, within SM_b20342 at 347.889 kb on - strand, within SM_b20342 at 348.172 kb on + strand, within SM_b20342 at 348.173 kb on - strand, within SM_b20342 at 348.182 kb on + strand, within SM_b20342 at 348.260 kb on + strand, within SM_b20342 at 348.262 kb on + strand, within SM_b20342 at 348.263 kb on - strand, within SM_b20342 at 348.513 kb on + strand at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.728 kb on - strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.940 kb on + strand at 348.941 kb on - strand at 348.966 kb on + strand at 348.966 kb on + strand at 349.127 kb on + strand at 349.128 kb on - strand at 349.153 kb on + strand at 349.154 kb on - strand at 349.154 kb on - strand at 349.177 kb on - strand at 349.196 kb on + strand at 349.197 kb on - strand at 349.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 345,496 - SM_b20340 0.82 -2.8 345,511 + +1.6 346,055 + +0.2 346,056 - +0.4 346,056 - +0.6 346,153 - +0.3 346,153 - +0.3 346,258 - +0.3 346,272 - -0.1 346,446 - +0.5 346,489 + -0.9 346,489 + +1.9 346,489 + -1.1 346,489 + +1.3 346,489 + -0.9 346,489 + +1.5 346,490 - +0.1 346,490 - +0.7 346,490 - -0.4 346,490 - -0.1 346,490 - -1.3 346,652 + SM_b20342 0.16 +2.4 346,655 + SM_b20342 0.16 -2.3 346,655 + SM_b20342 0.16 +0.8 346,984 + SM_b20342 0.31 -1.3 347,022 + SM_b20342 0.32 -0.3 347,022 + SM_b20342 0.32 -0.9 347,023 - SM_b20342 0.32 -1.7 347,143 + SM_b20342 0.38 +1.1 347,143 + SM_b20342 0.38 +0.3 347,144 - SM_b20342 0.38 +2.6 347,144 - SM_b20342 0.38 +0.9 347,144 - SM_b20342 0.38 +1.5 347,144 - SM_b20342 0.38 +0.2 347,244 + SM_b20342 0.42 +0.4 347,245 - SM_b20342 0.42 +0.4 347,245 - SM_b20342 0.42 +0.0 347,569 + SM_b20342 0.57 +1.1 347,827 + SM_b20342 0.69 -0.4 347,828 - -0.9 347,828 - SM_b20342 0.69 +1.5 347,889 - SM_b20342 0.72 +0.3 348,172 + SM_b20342 0.84 -0.2 348,173 - SM_b20342 0.84 +1.1 348,182 + SM_b20342 0.85 -0.2 348,260 + SM_b20342 0.88 -0.5 348,262 + SM_b20342 0.88 +1.3 348,263 - SM_b20342 0.88 -0.3 348,513 + +1.6 348,572 + SM_b20343 0.11 -1.0 348,572 + SM_b20343 0.11 +0.0 348,572 + SM_b20343 0.11 -0.8 348,728 - SM_b20343 0.45 -0.0 348,833 + SM_b20343 0.68 +1.0 348,833 + SM_b20343 0.68 +1.4 348,940 + -1.4 348,941 - +0.6 348,966 + -0.9 348,966 + -1.4 349,127 + -0.2 349,128 - -1.0 349,153 + -1.3 349,154 - -1.1 349,154 - +0.1 349,177 - -0.1 349,196 + -0.5 349,197 - +0.5 349,207 - +0.6
Or see this region's nucleotide sequence