Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21655 and SM_b20002 overlap by 4 nucleotides SM_b20002 and SM_b20003 are separated by 58 nucleotides SM_b20003 and SM_b20004 are separated by 6 nucleotides
SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) <small>(from data)</small>, at 3,086 to 5,353
_b21655
SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component <small>(from data)</small>, at 5,350 to 6,426
_b20002
SM_b20003: SM_b20003 - pyrroline-5-carboxylate reductase, at 6,485 to 7,261
_b20003
SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173
_b20004
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.460 kb on + strand, within SM_b21655 at 4.490 kb on + strand, within SM_b21655 at 4.491 kb on - strand, within SM_b21655 at 4.505 kb on + strand, within SM_b21655 at 4.568 kb on + strand, within SM_b21655 at 4.616 kb on + strand, within SM_b21655 at 4.617 kb on - strand, within SM_b21655 at 4.658 kb on + strand, within SM_b21655 at 4.658 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.704 kb on - strand at 4.704 kb on - strand, within SM_b21655 at 4.704 kb on - strand, within SM_b21655 at 4.704 kb on - strand, within SM_b21655 at 4.710 kb on - strand, within SM_b21655 at 4.842 kb on - strand, within SM_b21655 at 5.041 kb on + strand, within SM_b21655 at 5.041 kb on + strand, within SM_b21655 at 5.042 kb on - strand, within SM_b21655 at 5.380 kb on - strand at 5.380 kb on - strand at 5.426 kb on + strand at 5.426 kb on + strand at 5.427 kb on - strand at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.616 kb on + strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.706 kb on + strand, within SM_b20002 at 5.863 kb on - strand, within SM_b20002 at 5.914 kb on + strand, within SM_b20002 at 5.915 kb on - strand, within SM_b20002 at 6.013 kb on + strand, within SM_b20002 at 6.014 kb on - strand, within SM_b20002 at 6.281 kb on - strand, within SM_b20002 at 6.448 kb on + strand at 6.448 kb on + strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.490 kb on + strand at 6.947 kb on + strand, within SM_b20003 at 6.948 kb on - strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.987 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 4,460 + SM_b21655 0.61 -1.8 4,490 + SM_b21655 0.62 -0.3 4,491 - SM_b21655 0.62 +1.2 4,505 + SM_b21655 0.63 -0.1 4,568 + SM_b21655 0.65 -0.1 4,616 + SM_b21655 0.67 +0.0 4,617 - SM_b21655 0.68 +1.1 4,658 + SM_b21655 0.69 +0.6 4,658 + SM_b21655 0.69 -0.2 4,703 + SM_b21655 0.71 -0.0 4,703 + SM_b21655 0.71 -0.1 4,703 + SM_b21655 0.71 -1.1 4,703 + SM_b21655 0.71 +0.5 4,703 + SM_b21655 0.71 -0.1 4,703 + SM_b21655 0.71 -2.4 4,704 - -1.4 4,704 - SM_b21655 0.71 +0.2 4,704 - SM_b21655 0.71 +0.1 4,704 - SM_b21655 0.71 +0.1 4,710 - SM_b21655 0.72 -0.2 4,842 - SM_b21655 0.77 -0.7 5,041 + SM_b21655 0.86 +0.5 5,041 + SM_b21655 0.86 -0.2 5,042 - SM_b21655 0.86 +0.1 5,380 - +0.7 5,380 - +0.5 5,426 + -0.1 5,426 + -0.0 5,427 - -1.8 5,599 + SM_b20002 0.23 -0.3 5,599 + SM_b20002 0.23 +0.8 5,599 + SM_b20002 0.23 +0.7 5,608 + SM_b20002 0.24 +0.4 5,608 + SM_b20002 0.24 -0.2 5,616 + SM_b20002 0.25 +2.4 5,617 - SM_b20002 0.25 -1.3 5,617 - SM_b20002 0.25 -0.1 5,635 - SM_b20002 0.26 +0.3 5,635 - SM_b20002 0.26 +0.8 5,706 + SM_b20002 0.33 +0.8 5,863 - SM_b20002 0.48 -0.7 5,914 + SM_b20002 0.52 -0.1 5,915 - SM_b20002 0.52 +0.6 6,013 + SM_b20002 0.62 +0.3 6,014 - SM_b20002 0.62 +0.6 6,281 - SM_b20002 0.86 -0.4 6,448 + -0.8 6,448 + -1.0 6,449 - -0.9 6,449 - +1.0 6,449 - +0.1 6,449 - +0.6 6,490 + -0.2 6,947 + SM_b20003 0.59 +1.1 6,948 - SM_b20003 0.60 -0.5 6,986 + SM_b20003 0.64 -1.4 6,986 + SM_b20003 0.64 +0.1 6,987 - SM_b20003 0.65 -0.7 7,059 - SM_b20003 0.74 +0.3 7,059 - SM_b20003 0.74 -1.0
Or see this region's nucleotide sequence