Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2961

Experiment: Post-colonization (Day 12) - Cage3;Mouse4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT2959 and BT2960 are separated by 217 nucleotidesBT2960 and BT2961 are separated by 295 nucleotidesBT2961 and BT2962 are separated by 4 nucleotidesBT2962 and BT2963 are separated by 39 nucleotides BT2959: BT2959 - conserved hypothetical protein (NCBI ptt file), at 3,728,218 to 3,729,600 BT2959 BT2960: BT2960 - hypothetical protein (NCBI ptt file), at 3,729,818 to 3,730,069 BT2960 BT2961: BT2961 - hypothetical protein (NCBI ptt file), at 3,730,365 to 3,731,222 BT2961 BT2962: BT2962 - hypothetical protein (NCBI ptt file), at 3,731,227 to 3,731,448 BT2962 BT2963: BT2963 - conserved hypothetical protein (NCBI ptt file), at 3,731,488 to 3,734,430 BT2963 Position (kb) 3730 3731 3732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 3729.417 kb on + strand, within BT2959at 3729.417 kb on + strand, within BT2959at 3729.417 kb on + strand, within BT2959at 3729.417 kb on + strand, within BT2959at 3729.418 kb on - strand, within BT2959at 3729.438 kb on - strand, within BT2959at 3729.482 kb on - strandat 3729.558 kb on - strandat 3729.583 kb on + strandat 3729.613 kb on + strandat 3729.622 kb on - strandat 3729.633 kb on - strandat 3729.662 kb on + strandat 3729.662 kb on + strandat 3729.666 kb on + strandat 3729.670 kb on + strandat 3729.670 kb on + strandat 3729.671 kb on - strandat 3729.671 kb on - strandat 3729.687 kb on + strandat 3729.687 kb on + strandat 3729.690 kb on + strandat 3729.706 kb on + strandat 3729.706 kb on + strandat 3729.711 kb on + strandat 3729.871 kb on + strand, within BT2960at 3729.871 kb on + strand, within BT2960at 3729.872 kb on - strand, within BT2960at 3729.873 kb on + strand, within BT2960at 3729.919 kb on - strand, within BT2960at 3729.976 kb on + strand, within BT2960at 3730.028 kb on - strand, within BT2960at 3730.028 kb on - strand, within BT2960at 3730.041 kb on - strand, within BT2960at 3730.041 kb on - strand, within BT2960at 3730.062 kb on + strandat 3730.135 kb on + strandat 3730.158 kb on - strandat 3730.172 kb on + strandat 3730.172 kb on + strandat 3730.173 kb on - strandat 3730.173 kb on - strandat 3730.189 kb on - strandat 3730.189 kb on - strandat 3730.203 kb on - strandat 3730.211 kb on - strandat 3730.218 kb on + strandat 3730.219 kb on - strandat 3730.224 kb on - strandat 3730.294 kb on - strandat 3730.302 kb on + strandat 3730.303 kb on - strandat 3730.303 kb on - strandat 3730.318 kb on - strandat 3730.320 kb on - strandat 3730.367 kb on - strandat 3730.396 kb on + strandat 3730.416 kb on - strandat 3730.466 kb on - strand, within BT2961at 3730.471 kb on + strand, within BT2961at 3730.472 kb on - strand, within BT2961at 3730.524 kb on + strand, within BT2961at 3730.534 kb on - strand, within BT2961at 3730.544 kb on + strand, within BT2961at 3730.545 kb on - strand, within BT2961at 3730.559 kb on + strand, within BT2961at 3730.573 kb on + strand, within BT2961at 3730.573 kb on + strand, within BT2961at 3730.573 kb on + strand, within BT2961at 3730.573 kb on + strand, within BT2961at 3730.582 kb on - strand, within BT2961at 3730.582 kb on - strand, within BT2961at 3730.582 kb on - strand, within BT2961at 3730.582 kb on - strand, within BT2961at 3730.582 kb on - strand, within BT2961at 3730.583 kb on + strand, within BT2961at 3730.583 kb on + strand, within BT2961at 3730.584 kb on - strand, within BT2961at 3730.727 kb on + strand, within BT2961at 3730.736 kb on + strand, within BT2961at 3730.738 kb on + strand, within BT2961at 3730.738 kb on + strand, within BT2961at 3730.738 kb on + strand, within BT2961at 3730.739 kb on - strand, within BT2961at 3730.739 kb on - strand, within BT2961at 3730.856 kb on + strand, within BT2961at 3730.859 kb on + strand, within BT2961at 3730.860 kb on - strand, within BT2961at 3730.864 kb on + strand, within BT2961at 3731.028 kb on + strand, within BT2961at 3731.028 kb on + strand, within BT2961at 3731.028 kb on + strand, within BT2961at 3731.030 kb on + strand, within BT2961at 3731.031 kb on - strand, within BT2961at 3731.031 kb on - strand, within BT2961at 3731.031 kb on - strand, within BT2961at 3731.034 kb on - strand, within BT2961at 3731.074 kb on + strand, within BT2961at 3731.075 kb on - strand, within BT2961at 3731.108 kb on + strand, within BT2961at 3731.109 kb on - strand, within BT2961at 3731.114 kb on + strand, within BT2961at 3731.164 kb on + strandat 3731.199 kb on + strandat 3731.233 kb on + strandat 3731.248 kb on - strandat 3731.302 kb on + strand, within BT2962at 3731.331 kb on + strand, within BT2962at 3731.331 kb on + strand, within BT2962at 3731.334 kb on + strand, within BT2962at 3731.335 kb on - strand, within BT2962at 3731.382 kb on + strand, within BT2962at 3731.383 kb on - strand, within BT2962at 3731.384 kb on + strand, within BT2962at 3731.385 kb on - strand, within BT2962at 3731.385 kb on - strand, within BT2962at 3731.407 kb on - strand, within BT2962at 3731.407 kb on - strand, within BT2962at 3731.426 kb on + strandat 3731.427 kb on - strandat 3731.427 kb on - strandat 3731.428 kb on + strandat 3731.429 kb on - strandat 3731.429 kb on - strandat 3731.448 kb on + strandat 3731.448 kb on + strandat 3731.449 kb on - strandat 3731.451 kb on - strandat 3731.457 kb on + strandat 3731.470 kb on + strandat 3731.471 kb on - strandat 3731.472 kb on + strandat 3731.516 kb on + strandat 3731.517 kb on - strandat 3731.559 kb on + strandat 3731.560 kb on - strandat 3731.560 kb on - strandat 3731.561 kb on + strandat 3731.623 kb on - strandat 3731.626 kb on + strandat 3731.627 kb on - strandat 3731.755 kb on - strandat 3731.833 kb on - strand, within BT2963at 3731.835 kb on - strand, within BT2963at 3731.878 kb on + strand, within BT2963at 3731.959 kb on + strand, within BT2963at 3731.959 kb on + strand, within BT2963at 3731.959 kb on + strand, within BT2963at 3731.967 kb on - strand, within BT2963at 3732.063 kb on - strand, within BT2963at 3732.182 kb on + strand, within BT2963at 3732.215 kb on - strand, within BT2963

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage3;Mouse4
remove
3,729,417 + BT2959 0.87 -1.3
3,729,417 + BT2959 0.87 -0.3
3,729,417 + BT2959 0.87 -1.0
3,729,417 + BT2959 0.87 -1.6
3,729,418 - BT2959 0.87 +0.1
3,729,438 - BT2959 0.88 -0.0
3,729,482 - -0.9
3,729,558 - -2.0
3,729,583 + -1.6
3,729,613 + -0.5
3,729,622 - +1.2
3,729,633 - -0.0
3,729,662 + -0.8
3,729,662 + -1.0
3,729,666 + -1.4
3,729,670 + -2.6
3,729,670 + -0.2
3,729,671 - +1.5
3,729,671 - +2.7
3,729,687 + +0.2
3,729,687 + -0.4
3,729,690 + -3.3
3,729,706 + -1.0
3,729,706 + -0.0
3,729,711 + -0.3
3,729,871 + BT2960 0.21 +0.6
3,729,871 + BT2960 0.21 -0.8
3,729,872 - BT2960 0.21 -0.4
3,729,873 + BT2960 0.22 -0.3
3,729,919 - BT2960 0.40 -2.3
3,729,976 + BT2960 0.63 -0.8
3,730,028 - BT2960 0.83 -0.4
3,730,028 - BT2960 0.83 -0.8
3,730,041 - BT2960 0.88 -0.4
3,730,041 - BT2960 0.88 +1.2
3,730,062 + -2.1
3,730,135 + -2.1
3,730,158 - -0.0
3,730,172 + -0.8
3,730,172 + -0.8
3,730,173 - -0.8
3,730,173 - -1.3
3,730,189 - -0.1
3,730,189 - -0.0
3,730,203 - -0.9
3,730,211 - -1.9
3,730,218 + -0.1
3,730,219 - +0.1
3,730,224 - -1.8
3,730,294 - -1.8
3,730,302 + -1.4
3,730,303 - +0.2
3,730,303 - -1.1
3,730,318 - -1.9
3,730,320 - -0.0
3,730,367 - -2.3
3,730,396 + +0.7
3,730,416 - -1.0
3,730,466 - BT2961 0.12 -1.6
3,730,471 + BT2961 0.12 -1.4
3,730,472 - BT2961 0.12 -0.9
3,730,524 + BT2961 0.19 +1.6
3,730,534 - BT2961 0.20 -1.3
3,730,544 + BT2961 0.21 -0.2
3,730,545 - BT2961 0.21 -0.4
3,730,559 + BT2961 0.23 -0.4
3,730,573 + BT2961 0.24 -1.3
3,730,573 + BT2961 0.24 -0.8
3,730,573 + BT2961 0.24 -1.1
3,730,573 + BT2961 0.24 -0.1
3,730,582 - BT2961 0.25 +1.0
3,730,582 - BT2961 0.25 -0.8
3,730,582 - BT2961 0.25 -0.7
3,730,582 - BT2961 0.25 -0.8
3,730,582 - BT2961 0.25 -0.6
3,730,583 + BT2961 0.25 -1.1
3,730,583 + BT2961 0.25 -0.4
3,730,584 - BT2961 0.26 -0.0
3,730,727 + BT2961 0.42 -1.0
3,730,736 + BT2961 0.43 +9.6
3,730,738 + BT2961 0.43 -1.3
3,730,738 + BT2961 0.43 -1.4
3,730,738 + BT2961 0.43 -0.1
3,730,739 - BT2961 0.44 -0.4
3,730,739 - BT2961 0.44 +1.0
3,730,856 + BT2961 0.57 -0.0
3,730,859 + BT2961 0.58 +0.4
3,730,860 - BT2961 0.58 -1.2
3,730,864 + BT2961 0.58 +0.4
3,731,028 + BT2961 0.77 -0.9
3,731,028 + BT2961 0.77 +0.1
3,731,028 + BT2961 0.77 -1.0
3,731,030 + BT2961 0.78 -0.5
3,731,031 - BT2961 0.78 -1.3
3,731,031 - BT2961 0.78 -0.1
3,731,031 - BT2961 0.78 -1.3
3,731,034 - BT2961 0.78 +1.6
3,731,074 + BT2961 0.83 +0.7
3,731,075 - BT2961 0.83 +0.6
3,731,108 + BT2961 0.87 -0.7
3,731,109 - BT2961 0.87 -0.4
3,731,114 + BT2961 0.87 -2.4
3,731,164 + -0.4
3,731,199 + -0.9
3,731,233 + +0.1
3,731,248 - -1.3
3,731,302 + BT2962 0.34 -2.7
3,731,331 + BT2962 0.47 -1.9
3,731,331 + BT2962 0.47 -0.4
3,731,334 + BT2962 0.48 -0.6
3,731,335 - BT2962 0.49 -2.1
3,731,382 + BT2962 0.70 -0.2
3,731,383 - BT2962 0.70 +2.6
3,731,384 + BT2962 0.71 -1.3
3,731,385 - BT2962 0.71 -1.5
3,731,385 - BT2962 0.71 -0.0
3,731,407 - BT2962 0.81 -0.6
3,731,407 - BT2962 0.81 -0.5
3,731,426 + -1.2
3,731,427 - -2.1
3,731,427 - +0.6
3,731,428 + -0.4
3,731,429 - +0.5
3,731,429 - -0.4
3,731,448 + +2.6
3,731,448 + -1.7
3,731,449 - -0.4
3,731,451 - -1.0
3,731,457 + -0.7
3,731,470 + -1.0
3,731,471 - -0.8
3,731,472 + -0.4
3,731,516 + -2.0
3,731,517 - -2.0
3,731,559 + +0.4
3,731,560 - -1.1
3,731,560 - -1.9
3,731,561 + -0.0
3,731,623 - +1.6
3,731,626 + +1.1
3,731,627 - -0.1
3,731,755 - -0.5
3,731,833 - BT2963 0.12 +0.8
3,731,835 - BT2963 0.12 +0.2
3,731,878 + BT2963 0.13 -0.2
3,731,959 + BT2963 0.16 -1.1
3,731,959 + BT2963 0.16 +2.6
3,731,959 + BT2963 0.16 -0.4
3,731,967 - BT2963 0.16 -0.0
3,732,063 - BT2963 0.20 -2.8
3,732,182 + BT2963 0.24 -1.9
3,732,215 - BT2963 0.25 -1.6

Or see this region's nucleotide sequence