Experiment: Post-colonization (Day 12) - Cage3;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0411 and BT0412 are separated by 11 nucleotides BT0412 and BT0413 are separated by 16 nucleotides BT0413 and BT0414 are separated by 20 nucleotides
BT0411: BT0411 - CysQ, sulfite synthesis pathway protein (NCBI ptt file), at 497,130 to 497,936
BT0411
BT0412: BT0412 - putative Na+/sulfate symporter (NCBI ptt file), at 497,948 to 499,501
BT0412
BT0413: BT0413 - putative adenylylsulfate kinase (NCBI ptt file), at 499,518 to 500,123
BT0413
BT0414: BT0414 - sulfate adenylyltransferase subunit 2 (NCBI ptt file), at 500,144 to 501,052
BT0414
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 496.991 kb on - strand at 497.128 kb on + strand at 497.178 kb on - strand at 497.307 kb on - strand, within BT0411 at 497.360 kb on - strand, within BT0411 at 497.360 kb on - strand, within BT0411 at 497.521 kb on - strand, within BT0411 at 497.522 kb on + strand, within BT0411 at 497.523 kb on - strand, within BT0411 at 497.566 kb on + strand, within BT0411 at 497.770 kb on - strand, within BT0411 at 497.877 kb on + strand at 497.880 kb on - strand at 497.945 kb on + strand at 497.946 kb on - strand at 497.947 kb on + strand at 497.948 kb on - strand at 497.971 kb on - strand at 497.976 kb on + strand at 498.013 kb on + strand at 498.122 kb on - strand, within BT0412 at 498.135 kb on + strand at 498.281 kb on - strand, within BT0412 at 498.281 kb on - strand, within BT0412 at 498.291 kb on + strand, within BT0412 at 498.456 kb on - strand, within BT0412 at 498.520 kb on - strand, within BT0412 at 498.520 kb on - strand, within BT0412 at 498.522 kb on - strand, within BT0412 at 498.722 kb on - strand, within BT0412 at 498.800 kb on - strand, within BT0412 at 498.845 kb on - strand, within BT0412 at 498.929 kb on - strand, within BT0412 at 499.012 kb on + strand, within BT0412 at 499.050 kb on - strand, within BT0412 at 499.115 kb on - strand, within BT0412 at 499.153 kb on + strand, within BT0412 at 499.176 kb on - strand, within BT0412 at 499.192 kb on - strand, within BT0412 at 499.201 kb on - strand, within BT0412 at 499.333 kb on + strand, within BT0412 at 499.506 kb on + strand at 499.507 kb on - strand at 499.798 kb on - strand, within BT0413 at 499.959 kb on + strand, within BT0413 at 500.330 kb on - strand, within BT0414 at 500.417 kb on - strand, within BT0414 at 500.474 kb on - strand, within BT0414
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage3;Mouse4 remove 496,991 - -0.0 497,128 + -2.3 497,178 - -0.0 497,307 - BT0411 0.22 +0.4 497,360 - BT0411 0.29 -2.7 497,360 - BT0411 0.29 -3.2 497,521 - BT0411 0.48 -1.9 497,522 + BT0411 0.49 -0.4 497,523 - BT0411 0.49 -0.0 497,566 + BT0411 0.54 +2.1 497,770 - BT0411 0.79 -2.3 497,877 + -1.4 497,880 - -3.1 497,945 + -0.0 497,946 - -1.0 497,947 + -2.3 497,948 - -0.9 497,971 - -0.7 497,976 + -0.8 498,013 + -1.3 498,122 - BT0412 0.11 -2.3 498,135 + -0.8 498,281 - BT0412 0.21 -1.0 498,281 - BT0412 0.21 -1.3 498,291 + BT0412 0.22 -1.4 498,456 - BT0412 0.33 +0.2 498,520 - BT0412 0.37 +0.2 498,520 - BT0412 0.37 -1.8 498,522 - BT0412 0.37 -1.9 498,722 - BT0412 0.50 -0.8 498,800 - BT0412 0.55 +0.6 498,845 - BT0412 0.58 -2.7 498,929 - BT0412 0.63 -0.8 499,012 + BT0412 0.68 +0.2 499,050 - BT0412 0.71 -1.8 499,115 - BT0412 0.75 +0.6 499,153 + BT0412 0.78 -1.7 499,176 - BT0412 0.79 -1.1 499,192 - BT0412 0.80 -2.8 499,201 - BT0412 0.81 -0.0 499,333 + BT0412 0.89 -0.0 499,506 + -2.0 499,507 - -1.4 499,798 - BT0413 0.46 +0.6 499,959 + BT0413 0.73 -1.0 500,330 - BT0414 0.20 +0.6 500,417 - BT0414 0.30 -1.3 500,474 - BT0414 0.36 -0.8
Or see this region's nucleotide sequence