Strain Fitness in Sinorhizobium meliloti 1021 around SMc00649

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00650 and SMc00649 are separated by 230 nucleotidesSMc00649 and SMc00648 are separated by 4 nucleotidesSMc00648 and SMc00647 are separated by 29 nucleotides SMc00650: SMc00650 - hypothetical protein, at 2,925,548 to 2,926,630 SMc00650 SMc00649: SMc00649 - tRNA/rRNA methyltransferase, at 2,926,861 to 2,927,688 SMc00649 SMc00648: SMc00648 - hypothetical protein, at 2,927,693 to 2,928,076 SMc00648 SMc00647: SMc00647 - ribosomal large subunit pseudouridine synthase, at 2,928,106 to 2,929,137 SMc00647 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -2 -1 0 1 2at 2926.047 kb on + strand, within SMc00650at 2926.047 kb on + strand, within SMc00650at 2926.901 kb on - strandat 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.287 kb on + strand, within SMc00649at 2927.323 kb on + strand, within SMc00649at 2927.324 kb on - strand, within SMc00649at 2927.438 kb on + strand, within SMc00649at 2927.439 kb on - strand, within SMc00649at 2927.439 kb on - strand, within SMc00649at 2927.858 kb on + strand, within SMc00648at 2927.859 kb on - strand, within SMc00648at 2927.931 kb on + strand, within SMc00648at 2927.956 kb on + strand, within SMc00648at 2927.956 kb on + strand, within SMc00648at 2928.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,926,047 + SMc00650 0.46 +0.4
2,926,047 + SMc00650 0.46 -0.6
2,926,901 - +0.0
2,927,192 + SMc00649 0.40 -1.7
2,927,192 + SMc00649 0.40 -0.9
2,927,192 + SMc00649 0.40 -1.0
2,927,271 + SMc00649 0.50 -2.4
2,927,271 + SMc00649 0.50 +0.9
2,927,287 + SMc00649 0.51 -0.1
2,927,323 + SMc00649 0.56 -1.3
2,927,324 - SMc00649 0.56 +0.1
2,927,438 + SMc00649 0.70 +0.0
2,927,439 - SMc00649 0.70 +0.6
2,927,439 - SMc00649 0.70 -0.0
2,927,858 + SMc00648 0.43 +0.5
2,927,859 - SMc00648 0.43 +1.9
2,927,931 + SMc00648 0.62 -0.6
2,927,956 + SMc00648 0.68 -0.3
2,927,956 + SMc00648 0.68 +0.5
2,928,120 + -0.1

Or see this region's nucleotide sequence