Strain Fitness in Sinorhizobium meliloti 1021 around SMc00521

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00522 and SMc00521 are separated by 9 nucleotidesSMc00521 and SMc00520 are separated by 18 nucleotidesSMc00520 and SMc00519 are separated by 3 nucleotides SMc00522: SMc00522 - ATP-dependent RNA helicase, at 1,891,837 to 1,893,336 SMc00522 SMc00521: SMc00521 - hypothetical protein, at 1,893,346 to 1,893,753 SMc00521 SMc00520: SMc00520 - hypothetical protein, at 1,893,772 to 1,894,089 SMc00520 SMc00519: SMc00519 - hypothetical protein, at 1,894,093 to 1,895,709 SMc00519 Position (kb) 1893 1894Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1892.490 kb on + strand, within SMc00522at 1892.490 kb on + strandat 1892.524 kb on + strand, within SMc00522at 1892.824 kb on + strand, within SMc00522at 1892.824 kb on + strand, within SMc00522at 1892.824 kb on + strand, within SMc00522at 1892.824 kb on + strand, within SMc00522at 1892.825 kb on - strand, within SMc00522at 1892.825 kb on - strand, within SMc00522at 1892.825 kb on - strand, within SMc00522at 1893.096 kb on + strand, within SMc00522at 1893.096 kb on + strand, within SMc00522at 1893.097 kb on - strand, within SMc00522at 1893.097 kb on - strandat 1893.100 kb on - strand, within SMc00522at 1893.100 kb on - strand, within SMc00522at 1893.100 kb on - strand, within SMc00522at 1893.100 kb on - strand, within SMc00522at 1893.100 kb on - strand, within SMc00522at 1893.178 kb on - strand, within SMc00522at 1893.483 kb on + strand, within SMc00521at 1893.483 kb on + strand, within SMc00521at 1893.560 kb on + strand, within SMc00521at 1893.561 kb on - strand, within SMc00521at 1893.561 kb on - strand, within SMc00521at 1893.616 kb on + strand, within SMc00521at 1893.714 kb on - strandat 1893.714 kb on - strandat 1893.800 kb on + strandat 1893.800 kb on + strandat 1893.800 kb on + strandat 1893.801 kb on - strandat 1893.810 kb on + strand, within SMc00520at 1893.866 kb on + strand, within SMc00520at 1893.866 kb on + strand, within SMc00520at 1893.867 kb on - strand, within SMc00520at 1893.867 kb on - strand, within SMc00520at 1893.867 kb on - strand, within SMc00520at 1893.899 kb on + strand, within SMc00520at 1893.899 kb on + strand, within SMc00520at 1893.900 kb on - strand, within SMc00520at 1893.900 kb on - strand, within SMc00520at 1894.007 kb on + strand, within SMc00520at 1894.007 kb on + strand, within SMc00520at 1894.105 kb on + strandat 1894.106 kb on - strandat 1894.123 kb on + strandat 1894.124 kb on - strandat 1894.368 kb on + strand, within SMc00519at 1894.369 kb on - strand, within SMc00519at 1894.369 kb on - strand, within SMc00519at 1894.638 kb on + strand, within SMc00519

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,892,490 + SMc00522 0.44 +2.8
1,892,490 + +1.8
1,892,524 + SMc00522 0.46 +3.2
1,892,824 + SMc00522 0.66 +2.7
1,892,824 + SMc00522 0.66 +2.8
1,892,824 + SMc00522 0.66 +2.3
1,892,824 + SMc00522 0.66 +3.2
1,892,825 - SMc00522 0.66 +1.7
1,892,825 - SMc00522 0.66 +2.7
1,892,825 - SMc00522 0.66 +1.8
1,893,096 + SMc00522 0.84 +1.0
1,893,096 + SMc00522 0.84 +0.9
1,893,097 - SMc00522 0.84 +0.5
1,893,097 - +1.3
1,893,100 - SMc00522 0.84 +2.3
1,893,100 - SMc00522 0.84 +0.4
1,893,100 - SMc00522 0.84 +0.5
1,893,100 - SMc00522 0.84 +0.4
1,893,100 - SMc00522 0.84 +0.7
1,893,178 - SMc00522 0.89 +0.4
1,893,483 + SMc00521 0.34 +2.0
1,893,483 + SMc00521 0.34 +0.8
1,893,560 + SMc00521 0.52 +1.0
1,893,561 - SMc00521 0.53 +0.4
1,893,561 - SMc00521 0.53 +0.4
1,893,616 + SMc00521 0.66 +1.4
1,893,714 - -0.5
1,893,714 - -0.3
1,893,800 + +0.4
1,893,800 + +1.2
1,893,800 + +0.2
1,893,801 - -0.4
1,893,810 + SMc00520 0.12 +1.9
1,893,866 + SMc00520 0.30 -0.1
1,893,866 + SMc00520 0.30 +0.6
1,893,867 - SMc00520 0.30 +0.3
1,893,867 - SMc00520 0.30 -0.5
1,893,867 - SMc00520 0.30 +1.5
1,893,899 + SMc00520 0.40 -2.0
1,893,899 + SMc00520 0.40 -1.9
1,893,900 - SMc00520 0.40 -0.5
1,893,900 - SMc00520 0.40 -0.1
1,894,007 + SMc00520 0.74 +0.6
1,894,007 + SMc00520 0.74 +0.3
1,894,105 + +1.5
1,894,106 - +0.9
1,894,123 + +0.5
1,894,124 - -0.5
1,894,368 + SMc00519 0.17 +0.1
1,894,369 - SMc00519 0.17 -2.1
1,894,369 - SMc00519 0.17 -0.2
1,894,638 + SMc00519 0.34 +1.1

Or see this region's nucleotide sequence