Strain Fitness in Sinorhizobium meliloti 1021 around SMa1339

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1337 and SMa1339 are separated by 142 nucleotidesSMa1339 and SMa1341 are separated by 1 nucleotides SMa1337: SMa1337 - ABC transporter substrate-binding protein, at 731,337 to 732,644 SMa1337 SMa1339: SMa1339 - ABC transporter permease, at 732,787 to 733,692 SMa1339 SMa1341: SMa1341 - ABC transporter permease, at 733,694 to 734,653 SMa1341 Position (kb) 732 733 734Strain fitness (log2 ratio) -2 -1 0 1 2at 731.829 kb on + strand, within SMa1337at 731.829 kb on + strand, within SMa1337at 731.830 kb on - strand, within SMa1337at 731.830 kb on - strand, within SMa1337at 731.830 kb on - strand, within SMa1337at 731.830 kb on - strand, within SMa1337at 731.928 kb on + strand, within SMa1337at 732.006 kb on + strand, within SMa1337at 732.007 kb on - strand, within SMa1337at 732.016 kb on - strand, within SMa1337at 732.016 kb on - strand, within SMa1337at 732.089 kb on + strand, within SMa1337at 732.171 kb on + strandat 732.171 kb on + strand, within SMa1337at 732.172 kb on - strand, within SMa1337at 732.172 kb on - strand, within SMa1337at 732.227 kb on - strand, within SMa1337at 732.271 kb on - strand, within SMa1337at 732.310 kb on - strand, within SMa1337at 732.396 kb on + strand, within SMa1337at 732.450 kb on + strand, within SMa1337at 732.451 kb on - strand, within SMa1337at 732.466 kb on - strand, within SMa1337at 732.466 kb on - strand, within SMa1337at 732.546 kb on + strandat 732.546 kb on + strandat 732.546 kb on + strandat 732.547 kb on - strandat 732.552 kb on + strandat 732.631 kb on - strandat 732.648 kb on + strandat 733.001 kb on - strand, within SMa1339at 733.057 kb on + strand, within SMa1339at 733.213 kb on + strand, within SMa1339at 733.213 kb on + strand, within SMa1339at 733.294 kb on + strand, within SMa1339at 733.294 kb on + strand, within SMa1339at 733.294 kb on + strand, within SMa1339at 733.295 kb on - strand, within SMa1339at 733.295 kb on - strand, within SMa1339at 733.385 kb on - strand, within SMa1339at 733.421 kb on - strand, within SMa1339at 733.421 kb on - strand, within SMa1339at 733.421 kb on - strand, within SMa1339at 733.519 kb on + strand, within SMa1339at 733.520 kb on - strand, within SMa1339at 733.618 kb on + strandat 733.618 kb on + strandat 733.619 kb on - strandat 733.619 kb on - strandat 733.619 kb on - strandat 733.622 kb on + strandat 733.623 kb on - strandat 733.623 kb on - strandat 733.623 kb on - strandat 733.658 kb on - strandat 733.666 kb on + strandat 733.667 kb on - strandat 733.788 kb on - strandat 733.849 kb on + strand, within SMa1341at 733.931 kb on + strand, within SMa1341at 734.065 kb on + strand, within SMa1341at 734.102 kb on + strand, within SMa1341at 734.157 kb on + strand, within SMa1341at 734.197 kb on + strand, within SMa1341at 734.198 kb on - strand, within SMa1341at 734.198 kb on - strand, within SMa1341at 734.248 kb on + strand, within SMa1341at 734.248 kb on + strand, within SMa1341at 734.248 kb on + strand, within SMa1341at 734.249 kb on - strand, within SMa1341at 734.250 kb on + strand, within SMa1341at 734.259 kb on - strand, within SMa1341at 734.259 kb on - strand, within SMa1341at 734.274 kb on + strand, within SMa1341at 734.275 kb on - strand, within SMa1341at 734.275 kb on - strand, within SMa1341at 734.327 kb on + strand, within SMa1341at 734.328 kb on - strand, within SMa1341at 734.328 kb on - strand, within SMa1341at 734.437 kb on + strand, within SMa1341at 734.438 kb on - strand, within SMa1341at 734.677 kb on + strandat 734.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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731,829 + SMa1337 0.38 -0.1
731,829 + SMa1337 0.38 -0.2
731,830 - SMa1337 0.38 +0.3
731,830 - SMa1337 0.38 -0.7
731,830 - SMa1337 0.38 -0.3
731,830 - SMa1337 0.38 +0.3
731,928 + SMa1337 0.45 -1.1
732,006 + SMa1337 0.51 +0.7
732,007 - SMa1337 0.51 -0.6
732,016 - SMa1337 0.52 -0.1
732,016 - SMa1337 0.52 +0.8
732,089 + SMa1337 0.57 -0.1
732,171 + +0.8
732,171 + SMa1337 0.64 -2.0
732,172 - SMa1337 0.64 -2.2
732,172 - SMa1337 0.64 +0.3
732,227 - SMa1337 0.68 +0.8
732,271 - SMa1337 0.71 +0.2
732,310 - SMa1337 0.74 -1.6
732,396 + SMa1337 0.81 +0.7
732,450 + SMa1337 0.85 +0.5
732,451 - SMa1337 0.85 -0.5
732,466 - SMa1337 0.86 -0.4
732,466 - SMa1337 0.86 -0.0
732,546 + +0.8
732,546 + -1.8
732,546 + -0.2
732,547 - -1.3
732,552 + +0.6
732,631 - +0.7
732,648 + +0.1
733,001 - SMa1339 0.24 -1.3
733,057 + SMa1339 0.30 -0.3
733,213 + SMa1339 0.47 -1.7
733,213 + SMa1339 0.47 -0.3
733,294 + SMa1339 0.56 -0.6
733,294 + SMa1339 0.56 +0.1
733,294 + SMa1339 0.56 -0.2
733,295 - SMa1339 0.56 -0.6
733,295 - SMa1339 0.56 -0.2
733,385 - SMa1339 0.66 +0.7
733,421 - SMa1339 0.70 +1.5
733,421 - SMa1339 0.70 -0.4
733,421 - SMa1339 0.70 -0.5
733,519 + SMa1339 0.81 -0.3
733,520 - SMa1339 0.81 -0.0
733,618 + -2.0
733,618 + +0.4
733,619 - -2.2
733,619 - +0.1
733,619 - +0.2
733,622 + -1.2
733,623 - -0.6
733,623 - -0.4
733,623 - -0.5
733,658 - +0.4
733,666 + +0.6
733,667 - -0.1
733,788 - -1.0
733,849 + SMa1341 0.16 -0.7
733,931 + SMa1341 0.25 +0.7
734,065 + SMa1341 0.39 -0.6
734,102 + SMa1341 0.42 +0.9
734,157 + SMa1341 0.48 -0.6
734,197 + SMa1341 0.52 +0.7
734,198 - SMa1341 0.53 +1.0
734,198 - SMa1341 0.53 -0.7
734,248 + SMa1341 0.58 +2.2
734,248 + SMa1341 0.58 -0.3
734,248 + SMa1341 0.58 +0.3
734,249 - SMa1341 0.58 +0.0
734,250 + SMa1341 0.58 -0.1
734,259 - SMa1341 0.59 +1.4
734,259 - SMa1341 0.59 -0.5
734,274 + SMa1341 0.60 +1.4
734,275 - SMa1341 0.61 -0.1
734,275 - SMa1341 0.61 +0.3
734,327 + SMa1341 0.66 -0.2
734,328 - SMa1341 0.66 -1.1
734,328 - SMa1341 0.66 +0.2
734,437 + SMa1341 0.77 +0.1
734,438 - SMa1341 0.78 +0.5
734,677 + -0.3
734,678 - +0.2

Or see this region's nucleotide sequence