Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0890 and SMa0892 overlap by 1 nucleotides SMa0892 and SMa0894 are separated by 116 nucleotides SMa0894 and SMa0896 are separated by 166 nucleotides
SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392
SMa0890
SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655
SMa0892
SMa0894: SMa0894 - hypothetical protein, at 500,772 to 501,068
SMa0894
SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954
SMa0896
Position (kb) 497
498
499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2 at 496.465 kb on + strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.575 kb on + strand, within SMa0890 at 496.576 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.751 kb on - strand, within SMa0890 at 496.996 kb on - strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.280 kb on - strand at 497.280 kb on - strand at 497.362 kb on + strand at 497.363 kb on - strand at 497.363 kb on - strand at 497.623 kb on + strand at 497.644 kb on + strand at 497.645 kb on - strand at 497.732 kb on - strand, within SMa0892 at 497.830 kb on + strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.317 kb on - strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.326 kb on - strand, within SMa0892 at 498.377 kb on + strand, within SMa0892 at 498.559 kb on + strand, within SMa0892 at 498.560 kb on - strand, within SMa0892 at 498.568 kb on + strand, within SMa0892 at 498.568 kb on + strand, within SMa0892 at 498.569 kb on - strand, within SMa0892 at 498.569 kb on - strand, within SMa0892 at 498.777 kb on - strand, within SMa0892 at 499.069 kb on + strand, within SMa0892 at 499.069 kb on + strand, within SMa0892 at 499.070 kb on - strand, within SMa0892 at 499.097 kb on + strand, within SMa0892 at 499.098 kb on - strand, within SMa0892 at 499.112 kb on + strand, within SMa0892 at 499.134 kb on + strand, within SMa0892 at 499.134 kb on + strand, within SMa0892 at 499.135 kb on - strand, within SMa0892 at 499.165 kb on + strand, within SMa0892 at 499.231 kb on + strand, within SMa0892 at 499.232 kb on - strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.449 kb on - strand, within SMa0892 at 499.476 kb on + strand, within SMa0892 at 499.476 kb on + strand, within SMa0892 at 499.528 kb on + strand, within SMa0892 at 499.585 kb on + strand, within SMa0892 at 499.652 kb on - strand, within SMa0892 at 499.832 kb on + strand, within SMa0892 at 499.833 kb on - strand, within SMa0892 at 500.105 kb on + strand, within SMa0892 at 500.106 kb on - strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.114 kb on - strand, within SMa0892 at 500.122 kb on - strand, within SMa0892 at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.617 kb on - strand at 500.689 kb on + strand at 500.707 kb on - strand at 500.869 kb on - strand, within SMa0894 at 500.869 kb on - strand, within SMa0894 at 501.149 kb on - strand at 501.263 kb on - strand at 501.263 kb on - strand at 501.366 kb on + strand, within SMa0896 at 501.492 kb on + strand, within SMa0896 at 501.637 kb on + strand, within SMa0896 at 501.638 kb on - strand, within SMa0896
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 496,465 + SMa0890 0.35 +0.1 496,465 + SMa0890 0.35 +2.0 496,561 + SMa0890 0.42 +0.3 496,561 + SMa0890 0.42 +0.2 496,575 + SMa0890 0.43 -0.1 496,576 - SMa0890 0.43 +0.7 496,659 - SMa0890 0.48 +0.1 496,659 - SMa0890 0.48 -0.2 496,659 - SMa0890 0.48 -1.4 496,751 - SMa0890 0.55 +0.9 496,996 - SMa0890 0.72 -0.1 497,035 + SMa0890 0.75 +0.9 497,035 + SMa0890 0.75 +1.4 497,036 - SMa0890 0.75 -0.8 497,036 - SMa0890 0.75 -0.4 497,280 - +2.3 497,280 - -0.6 497,362 + +0.5 497,363 - -1.0 497,363 - +0.1 497,623 + +0.5 497,644 + +0.2 497,645 - +0.2 497,732 - SMa0892 0.10 -0.3 497,830 + SMa0892 0.13 +0.0 498,158 - SMa0892 0.23 -0.1 498,158 - SMa0892 0.23 -0.1 498,217 + SMa0892 0.25 -0.3 498,217 + SMa0892 0.25 +0.4 498,317 - SMa0892 0.28 +0.8 498,325 + SMa0892 0.29 +0.6 498,325 + SMa0892 0.29 +0.3 498,325 + SMa0892 0.29 -0.1 498,325 + SMa0892 0.29 -0.3 498,326 - SMa0892 0.29 -1.1 498,377 + SMa0892 0.30 +0.4 498,559 + SMa0892 0.36 +1.1 498,560 - SMa0892 0.36 +1.2 498,568 + SMa0892 0.36 +0.4 498,568 + SMa0892 0.36 +0.4 498,569 - SMa0892 0.36 +0.4 498,569 - SMa0892 0.36 -0.6 498,777 - SMa0892 0.42 +1.2 499,069 + SMa0892 0.51 +1.6 499,069 + SMa0892 0.51 +0.4 499,070 - SMa0892 0.51 +1.7 499,097 + SMa0892 0.52 -0.5 499,098 - SMa0892 0.52 -1.6 499,112 + SMa0892 0.53 +0.6 499,134 + SMa0892 0.53 -0.6 499,134 + SMa0892 0.53 +0.4 499,135 - SMa0892 0.53 +1.2 499,165 + SMa0892 0.54 +0.3 499,231 + SMa0892 0.56 -0.0 499,232 - SMa0892 0.56 -0.1 499,448 + SMa0892 0.63 +0.5 499,448 + SMa0892 0.63 -0.2 499,448 + SMa0892 0.63 -1.7 499,449 - SMa0892 0.63 -1.0 499,476 + SMa0892 0.64 +0.2 499,476 + SMa0892 0.64 -1.3 499,528 + SMa0892 0.65 +0.3 499,585 + SMa0892 0.67 -0.6 499,652 - SMa0892 0.69 +1.0 499,832 + SMa0892 0.75 +1.0 499,833 - SMa0892 0.75 +0.2 500,105 + SMa0892 0.83 -0.1 500,106 - SMa0892 0.83 -0.8 500,113 + SMa0892 0.83 +0.5 500,113 + SMa0892 0.83 +0.7 500,113 + SMa0892 0.83 +0.4 500,113 + SMa0892 0.83 +1.8 500,114 - SMa0892 0.83 +0.4 500,122 - SMa0892 0.84 +0.0 500,597 + +1.2 500,597 + -0.3 500,597 + +0.1 500,597 + -1.1 500,598 - +0.2 500,598 - -1.8 500,598 - +0.4 500,598 - -2.2 500,598 - -2.1 500,617 - -0.3 500,689 + -0.4 500,707 - -0.1 500,869 - SMa0894 0.33 +0.1 500,869 - SMa0894 0.33 -0.1 501,149 - +0.7 501,263 - +0.4 501,263 - +0.5 501,366 + SMa0896 0.18 -0.7 501,492 + SMa0896 0.36 -1.3 501,637 + SMa0896 0.56 +0.3 501,638 - SMa0896 0.56 -0.9
Or see this region's nucleotide sequence