Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0626 and SMa0627 are separated by 386 nucleotides SMa0627 and SMa0629 are separated by 267 nucleotides SMa0629 and SMa0630 are separated by 23 nucleotides
SMa0626: SMa0626 - hypothetical protein, at 335,117 to 336,379
SMa0626
SMa0627: SMa0627 - aquaporin Z, at 336,766 to 337,464
SMa0627
SMa0629: SMa0629 - hypothetical protein, at 337,732 to 338,109
SMa0629
SMa0630: SMa0630 - hypothetical protein, at 338,133 to 339,704
SMa0630
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.928 kb on - strand, within SMa0626 at 335.987 kb on + strand, within SMa0626 at 336.042 kb on + strand, within SMa0626 at 336.043 kb on - strand, within SMa0626 at 336.043 kb on - strand, within SMa0626 at 336.190 kb on + strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.191 kb on - strand, within SMa0626 at 336.263 kb on - strand at 336.331 kb on + strand at 336.522 kb on + strand at 336.523 kb on - strand at 336.575 kb on - strand at 336.577 kb on - strand at 336.577 kb on - strand at 336.577 kb on - strand at 336.583 kb on + strand at 336.704 kb on + strand at 336.730 kb on + strand at 336.736 kb on - strand at 336.920 kb on - strand, within SMa0627 at 336.921 kb on + strand, within SMa0627 at 336.921 kb on + strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 336.922 kb on - strand, within SMa0627 at 337.016 kb on - strand, within SMa0627 at 337.063 kb on + strand, within SMa0627 at 337.064 kb on - strand, within SMa0627 at 337.064 kb on - strand, within SMa0627 at 337.305 kb on + strand, within SMa0627 at 337.449 kb on + strand at 337.462 kb on + strand at 337.462 kb on + strand at 337.505 kb on + strand at 337.506 kb on - strand at 337.528 kb on + strand at 337.528 kb on + strand at 337.529 kb on - strand at 337.572 kb on + strand at 337.573 kb on - strand at 337.573 kb on - strand at 337.711 kb on - strand at 337.799 kb on + strand, within SMa0629 at 337.800 kb on - strand, within SMa0629 at 337.800 kb on - strand, within SMa0629 at 338.022 kb on + strand, within SMa0629 at 338.022 kb on + strand, within SMa0629 at 338.023 kb on - strand, within SMa0629 at 338.023 kb on - strand, within SMa0629 at 338.023 kb on - strand, within SMa0629 at 338.059 kb on - strand, within SMa0629 at 338.070 kb on + strand, within SMa0629 at 338.089 kb on + strand at 338.090 kb on - strand at 338.135 kb on - strand at 338.307 kb on + strand, within SMa0630 at 338.308 kb on - strand, within SMa0630 at 338.310 kb on - strand, within SMa0630
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 335,928 - SMa0626 0.64 +0.1 335,987 + SMa0626 0.69 -1.1 336,042 + SMa0626 0.73 +0.0 336,043 - SMa0626 0.73 +0.3 336,043 - SMa0626 0.73 +0.2 336,190 + SMa0626 0.85 +0.1 336,191 - SMa0626 0.85 -0.2 336,191 - SMa0626 0.85 -2.1 336,191 - SMa0626 0.85 +1.0 336,263 - -1.0 336,331 + -0.2 336,522 + +0.8 336,523 - +1.3 336,575 - -1.3 336,577 - -0.1 336,577 - +2.0 336,577 - -0.1 336,583 + +0.3 336,704 + +1.0 336,730 + -0.7 336,736 - +1.3 336,920 - SMa0627 0.22 -0.5 336,921 + SMa0627 0.22 -0.3 336,921 + SMa0627 0.22 -0.7 336,922 - SMa0627 0.22 +0.3 336,922 - SMa0627 0.22 -0.4 336,922 - SMa0627 0.22 -0.4 337,016 - SMa0627 0.36 -0.2 337,063 + SMa0627 0.42 -1.7 337,064 - SMa0627 0.43 -0.1 337,064 - SMa0627 0.43 -0.4 337,305 + SMa0627 0.77 -1.7 337,449 + -0.8 337,462 + +0.4 337,462 + -0.4 337,505 + -1.4 337,506 - -0.2 337,528 + -0.4 337,528 + +0.0 337,529 - -1.6 337,572 + +0.2 337,573 - +0.1 337,573 - +0.5 337,711 - +0.2 337,799 + SMa0629 0.18 -1.8 337,800 - SMa0629 0.18 +0.0 337,800 - SMa0629 0.18 -0.1 338,022 + SMa0629 0.77 -0.9 338,022 + SMa0629 0.77 +0.2 338,023 - SMa0629 0.77 -2.1 338,023 - SMa0629 0.77 +1.0 338,023 - SMa0629 0.77 -0.9 338,059 - SMa0629 0.87 -0.4 338,070 + SMa0629 0.89 +0.9 338,089 + -0.4 338,090 - +1.4 338,135 - +0.4 338,307 + SMa0630 0.11 -0.3 338,308 - SMa0630 0.11 +1.1 338,310 - SMa0630 0.11 +0.2
Or see this region's nucleotide sequence