Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0545 and SMa0548 overlap by 1 nucleotides SMa0548 and SMa0551 are separated by 339 nucleotides SMa0551 and SMa0552 are separated by 92 nucleotides SMa0552 and SMa0554 overlap by 23 nucleotides
SMa0545: SMa0545 - hypothetical protein, at 291,198 to 291,638
SMa0545
SMa0548: SMa0548 - hypothetical protein, at 291,638 to 291,877
SMa0548
SMa0551: SMa0551 - N-ethylammeline chlorohydrolase, at 292,217 to 293,509
SMa0551
SMa0552: SMa0552 - cyclic amidohydrolase, at 293,602 to 294,093
SMa0552
SMa0554: SMa0554 - hypothetical protein, at 294,071 to 294,868
SMa0554
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1
2 at 291.231 kb on + strand at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.350 kb on - strand, within SMa0545 at 291.490 kb on + strand, within SMa0545 at 292.223 kb on - strand at 292.264 kb on - strand at 292.276 kb on + strand at 292.276 kb on + strand at 292.341 kb on - strand at 292.368 kb on + strand, within SMa0551 at 292.463 kb on + strand, within SMa0551 at 292.524 kb on + strand, within SMa0551 at 292.525 kb on - strand, within SMa0551 at 292.525 kb on - strand, within SMa0551 at 292.539 kb on - strand, within SMa0551 at 292.539 kb on - strand, within SMa0551 at 292.801 kb on + strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 293.077 kb on + strand, within SMa0551 at 293.078 kb on - strand, within SMa0551 at 293.080 kb on + strand, within SMa0551 at 293.100 kb on + strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.151 kb on - strand, within SMa0551 at 293.292 kb on + strand, within SMa0551 at 293.446 kb on + strand at 293.447 kb on - strand at 293.447 kb on - strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.490 kb on - strand at 293.490 kb on - strand at 293.559 kb on + strand at 293.595 kb on + strand at 293.595 kb on + strand at 293.596 kb on - strand at 293.596 kb on - strand at 293.601 kb on + strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.702 kb on + strand, within SMa0552 at 293.736 kb on + strand, within SMa0552 at 293.955 kb on + strand, within SMa0552 at 293.963 kb on - strand, within SMa0552 at 293.996 kb on + strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 294.057 kb on + strand at 294.058 kb on - strand at 294.058 kb on - strand at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.233 kb on + strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.293 kb on + strand, within SMa0554 at 294.399 kb on - strand, within SMa0554 at 294.425 kb on + strand, within SMa0554 at 294.426 kb on - strand, within SMa0554
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 291,231 + +0.2 291,290 + SMa0545 0.21 +1.0 291,290 + SMa0545 0.21 -0.3 291,290 + SMa0545 0.21 +0.0 291,290 + SMa0545 0.21 -0.6 291,337 + SMa0545 0.32 -0.8 291,337 + SMa0545 0.32 -1.5 291,350 - SMa0545 0.34 -1.7 291,490 + SMa0545 0.66 -1.0 292,223 - -0.6 292,264 - -0.9 292,276 + +0.2 292,276 + +1.0 292,341 - -0.8 292,368 + SMa0551 0.12 +1.2 292,463 + SMa0551 0.19 -0.3 292,524 + SMa0551 0.24 +0.5 292,525 - SMa0551 0.24 +0.4 292,525 - SMa0551 0.24 +0.4 292,539 - SMa0551 0.25 +0.7 292,539 - SMa0551 0.25 -0.5 292,801 + SMa0551 0.45 +0.4 292,910 - SMa0551 0.54 -0.1 292,910 - SMa0551 0.54 -0.0 293,077 + SMa0551 0.67 -0.8 293,078 - SMa0551 0.67 -0.3 293,080 + SMa0551 0.67 +0.8 293,100 + SMa0551 0.68 -0.1 293,101 - SMa0551 0.68 +0.2 293,101 - SMa0551 0.68 +1.5 293,101 - SMa0551 0.68 +1.1 293,151 - SMa0551 0.72 +1.0 293,292 + SMa0551 0.83 +0.0 293,446 + +1.0 293,447 - +2.0 293,447 - +1.0 293,489 + +0.3 293,489 + +0.1 293,489 + -0.2 293,489 + +0.9 293,490 - -0.3 293,490 - -1.0 293,559 + +0.9 293,595 + +0.8 293,595 + -1.1 293,596 - -0.7 293,596 - +0.0 293,601 + -0.2 293,602 - -0.6 293,602 - -0.3 293,602 - -0.8 293,702 + SMa0552 0.20 -0.6 293,736 + SMa0552 0.27 +0.2 293,955 + SMa0552 0.72 -0.6 293,963 - SMa0552 0.73 +0.2 293,996 + SMa0552 0.80 -0.1 293,997 - SMa0552 0.80 -2.3 293,997 - SMa0552 0.80 -0.2 293,997 - SMa0552 0.80 +0.3 293,997 - SMa0552 0.80 +0.2 294,057 + -0.2 294,058 - -0.3 294,058 - -0.3 294,222 - SMa0554 0.19 +0.7 294,222 - SMa0554 0.19 -0.1 294,222 - SMa0554 0.19 -1.2 294,222 - SMa0554 0.19 +0.3 294,233 + SMa0554 0.20 -1.2 294,259 - SMa0554 0.24 -0.2 294,259 - SMa0554 0.24 +0.1 294,293 + SMa0554 0.28 -0.2 294,399 - SMa0554 0.41 +0.5 294,425 + SMa0554 0.44 +0.1 294,426 - SMa0554 0.44 -0.2
Or see this region's nucleotide sequence