Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0352 and SMa0353 are separated by 102 nucleotides SMa0353 and SMa0355 are separated by 174 nucleotides
SMa0352: SMa0352 - hypothetical protein, at 189,834 to 190,730
SMa0352
SMa0353: SMa0353 - LysR family transcriptional regulator, at 190,833 to 191,747
SMa0353
SMa0355: SMa0355 - LysR family transcriptional regulator, at 191,922 to 192,416
SMa0355
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1 at 190.025 kb on + strand, within SMa0352 at 190.262 kb on + strand, within SMa0352 at 190.263 kb on - strand, within SMa0352 at 190.263 kb on - strand at 190.263 kb on - strand, within SMa0352 at 190.474 kb on + strand, within SMa0352 at 190.475 kb on - strand, within SMa0352 at 190.516 kb on + strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.517 kb on - strand, within SMa0352 at 190.770 kb on + strand at 190.771 kb on - strand at 190.950 kb on + strand, within SMa0353 at 191.119 kb on + strand, within SMa0353 at 191.120 kb on - strand, within SMa0353 at 191.224 kb on + strand, within SMa0353 at 191.224 kb on + strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.225 kb on - strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.226 kb on + strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.227 kb on - strand, within SMa0353 at 191.277 kb on - strand, within SMa0353 at 191.328 kb on - strand, within SMa0353 at 191.328 kb on - strand, within SMa0353 at 191.421 kb on - strand, within SMa0353 at 191.421 kb on - strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.489 kb on + strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.490 kb on - strand, within SMa0353 at 191.656 kb on - strand at 191.735 kb on + strand at 191.736 kb on - strand at 191.745 kb on + strand at 191.746 kb on - strand at 191.864 kb on + strand at 191.864 kb on + strand at 191.894 kb on - strand at 191.983 kb on + strand, within SMa0355 at 192.023 kb on + strand, within SMa0355 at 192.023 kb on + strand, within SMa0355 at 192.040 kb on - strand, within SMa0355 at 192.040 kb on - strand, within SMa0355 at 192.040 kb on - strand, within SMa0355 at 192.113 kb on + strand, within SMa0355 at 192.114 kb on - strand, within SMa0355 at 192.216 kb on - strand, within SMa0355 at 192.297 kb on - strand, within SMa0355 at 192.627 kb on + strand at 192.627 kb on + strand at 192.630 kb on + strand at 192.630 kb on + strand at 192.644 kb on + strand at 192.645 kb on - strand at 192.676 kb on + strand at 192.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 190,025 + SMa0352 0.21 +0.6 190,262 + SMa0352 0.48 -0.3 190,263 - SMa0352 0.48 +1.2 190,263 - +1.7 190,263 - SMa0352 0.48 -0.6 190,474 + SMa0352 0.71 +0.3 190,475 - SMa0352 0.71 -0.0 190,516 + SMa0352 0.76 +0.4 190,517 - SMa0352 0.76 +0.1 190,517 - SMa0352 0.76 +0.0 190,517 - SMa0352 0.76 +1.0 190,770 + +0.7 190,771 - +1.7 190,950 + SMa0353 0.13 +1.0 191,119 + SMa0353 0.31 +0.8 191,120 - SMa0353 0.31 -0.1 191,224 + SMa0353 0.43 -1.0 191,224 + SMa0353 0.43 -1.2 191,225 - SMa0353 0.43 +0.2 191,225 - SMa0353 0.43 +0.3 191,225 - SMa0353 0.43 +0.6 191,225 - SMa0353 0.43 -0.2 191,225 - SMa0353 0.43 -0.3 191,225 - SMa0353 0.43 -1.9 191,226 + SMa0353 0.43 -1.0 191,226 + SMa0353 0.43 -0.1 191,226 + SMa0353 0.43 -0.1 191,227 - SMa0353 0.43 -0.9 191,227 - SMa0353 0.43 +0.0 191,227 - SMa0353 0.43 +0.5 191,277 - SMa0353 0.49 -0.1 191,328 - SMa0353 0.54 -1.2 191,328 - SMa0353 0.54 -0.8 191,421 - SMa0353 0.64 -0.4 191,421 - SMa0353 0.64 -0.8 191,489 + SMa0353 0.72 -0.2 191,489 + SMa0353 0.72 -0.1 191,489 + SMa0353 0.72 +0.1 191,490 - SMa0353 0.72 +0.2 191,490 - SMa0353 0.72 -1.3 191,490 - SMa0353 0.72 -0.0 191,490 - SMa0353 0.72 -0.3 191,490 - SMa0353 0.72 +1.5 191,490 - SMa0353 0.72 -1.9 191,490 - SMa0353 0.72 -0.2 191,656 - +0.0 191,735 + -1.2 191,736 - -0.5 191,745 + -2.5 191,746 - +0.1 191,864 + +0.2 191,864 + +1.0 191,894 - +0.7 191,983 + SMa0355 0.12 -0.3 192,023 + SMa0355 0.20 -0.8 192,023 + SMa0355 0.20 +0.9 192,040 - SMa0355 0.24 +1.3 192,040 - SMa0355 0.24 +0.2 192,040 - SMa0355 0.24 -0.3 192,113 + SMa0355 0.39 -0.4 192,114 - SMa0355 0.39 -0.8 192,216 - SMa0355 0.59 -0.9 192,297 - SMa0355 0.76 -0.7 192,627 + -0.4 192,627 + +0.3 192,630 + -1.4 192,630 + +0.0 192,644 + -0.4 192,645 - +0.5 192,676 + -0.5 192,677 - +0.0
Or see this region's nucleotide sequence