Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21443

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21441 and SM_b21442 are separated by 12 nucleotidesSM_b21442 and SM_b21443 are separated by 51 nucleotidesSM_b21443 and SM_b21444 are separated by 17 nucleotides SM_b21441: SM_b21441 - inosine-5'-monophosphate dehydrogenase, at 1,371,045 to 1,371,485 _b21441 SM_b21442: SM_b21442 - hypothetical protein, at 1,371,498 to 1,371,947 _b21442 SM_b21443: SM_b21443 - hypothetical protein, at 1,371,999 to 1,372,313 _b21443 SM_b21444: SM_b21444 - osmotic sensory protein, at 1,372,331 to 1,373,074 _b21444 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1371.040 kb on - strandat 1371.040 kb on - strandat 1371.041 kb on + strandat 1371.305 kb on + strand, within SM_b21441at 1371.306 kb on - strand, within SM_b21441at 1371.306 kb on - strand, within SM_b21441at 1371.477 kb on + strandat 1371.847 kb on - strand, within SM_b21442at 1371.893 kb on + strand, within SM_b21442at 1371.894 kb on - strand, within SM_b21442at 1371.911 kb on + strandat 1371.982 kb on - strandat 1372.002 kb on + strandat 1372.002 kb on + strandat 1372.002 kb on + strandat 1372.002 kb on + strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.003 kb on - strandat 1372.134 kb on + strand, within SM_b21443at 1372.134 kb on + strand, within SM_b21443at 1372.135 kb on - strand, within SM_b21443at 1372.358 kb on + strandat 1372.358 kb on + strandat 1372.359 kb on - strandat 1372.424 kb on + strand, within SM_b21444at 1372.430 kb on + strand, within SM_b21444at 1372.430 kb on + strand, within SM_b21444at 1372.431 kb on - strand, within SM_b21444at 1372.533 kb on - strand, within SM_b21444at 1372.578 kb on - strand, within SM_b21444at 1372.613 kb on + strand, within SM_b21444at 1372.613 kb on + strand, within SM_b21444at 1372.613 kb on + strandat 1372.629 kb on - strand, within SM_b21444at 1372.914 kb on + strand, within SM_b21444at 1373.016 kb on + strandat 1373.016 kb on + strandat 1373.017 kb on - strandat 1373.017 kb on - strandat 1373.038 kb on + strandat 1373.038 kb on + strandat 1373.038 kb on + strandat 1373.039 kb on - strandat 1373.039 kb on - strandat 1373.068 kb on + strandat 1373.110 kb on + strandat 1373.110 kb on + strandat 1373.186 kb on + strandat 1373.186 kb on + strandat 1373.187 kb on - strandat 1373.190 kb on + strandat 1373.190 kb on + strandat 1373.190 kb on + strandat 1373.191 kb on - strandat 1373.191 kb on - strandat 1373.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,371,040 - -0.9
1,371,040 - -0.8
1,371,041 + +0.1
1,371,305 + SM_b21441 0.59 -1.3
1,371,306 - SM_b21441 0.59 +2.8
1,371,306 - SM_b21441 0.59 +0.2
1,371,477 + -0.2
1,371,847 - SM_b21442 0.78 +0.1
1,371,893 + SM_b21442 0.88 +0.3
1,371,894 - SM_b21442 0.88 -0.6
1,371,911 + -1.2
1,371,982 - +1.4
1,372,002 + +0.4
1,372,002 + +0.6
1,372,002 + +1.1
1,372,002 + -1.6
1,372,003 - +0.2
1,372,003 - -0.5
1,372,003 - -0.5
1,372,003 - +0.2
1,372,003 - -0.5
1,372,003 - -0.7
1,372,003 - -0.4
1,372,003 - +0.5
1,372,134 + SM_b21443 0.43 -0.6
1,372,134 + SM_b21443 0.43 -0.9
1,372,135 - SM_b21443 0.43 -1.6
1,372,358 + +0.1
1,372,358 + -0.5
1,372,359 - -1.5
1,372,424 + SM_b21444 0.12 +1.1
1,372,430 + SM_b21444 0.13 -0.6
1,372,430 + SM_b21444 0.13 +0.2
1,372,431 - SM_b21444 0.13 -0.6
1,372,533 - SM_b21444 0.27 -0.4
1,372,578 - SM_b21444 0.33 -0.3
1,372,613 + SM_b21444 0.38 -0.2
1,372,613 + SM_b21444 0.38 -0.5
1,372,613 + +1.8
1,372,629 - SM_b21444 0.40 +0.4
1,372,914 + SM_b21444 0.78 -0.3
1,373,016 + -0.6
1,373,016 + +0.4
1,373,017 - -0.1
1,373,017 - -0.1
1,373,038 + -3.0
1,373,038 + +0.1
1,373,038 + -0.1
1,373,039 - -1.4
1,373,039 - +0.5
1,373,068 + +0.3
1,373,110 + -0.0
1,373,110 + +0.4
1,373,186 + +1.8
1,373,186 + -0.4
1,373,187 - -0.1
1,373,190 + +0.0
1,373,190 + -0.6
1,373,190 + +0.8
1,373,191 - -2.2
1,373,191 - -0.7
1,373,253 - +1.1

Or see this region's nucleotide sequence