Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21291

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21289 and SM_b21290 overlap by 11 nucleotidesSM_b21290 and SM_b21291 are separated by 11 nucleotidesSM_b21291 and SM_b21292 are separated by 149 nucleotides SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078 _b21289 SM_b21290: SM_b21290 - NADPH quinone oxidoreductase, at 866,068 to 867,048 _b21290 SM_b21291: SM_b21291 - LysR family transcriptional regulator, at 867,060 to 868,007 _b21291 SM_b21292: SM_b21292 - membrane protein, at 868,157 to 869,395 _b21292 Position (kb) 867 868 869Strain fitness (log2 ratio) -1 0 1at 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.130 kb on + strandat 866.189 kb on - strand, within SM_b21290at 866.189 kb on - strand, within SM_b21290at 866.277 kb on - strand, within SM_b21290at 866.363 kb on - strand, within SM_b21290at 866.371 kb on + strand, within SM_b21290at 866.372 kb on - strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.376 kb on - strand, within SM_b21290at 866.399 kb on + strand, within SM_b21290at 866.650 kb on + strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.718 kb on - strand, within SM_b21290at 866.825 kb on + strand, within SM_b21290at 866.870 kb on + strand, within SM_b21290at 867.028 kb on - strandat 867.257 kb on + strand, within SM_b21291at 867.258 kb on - strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.401 kb on - strand, within SM_b21291at 867.403 kb on + strand, within SM_b21291at 867.421 kb on + strand, within SM_b21291at 867.568 kb on - strand, within SM_b21291at 867.617 kb on + strand, within SM_b21291at 867.618 kb on - strand, within SM_b21291at 867.618 kb on - strand, within SM_b21291at 867.675 kb on + strand, within SM_b21291at 867.812 kb on - strand, within SM_b21291at 867.878 kb on + strand, within SM_b21291at 868.038 kb on + strandat 868.126 kb on + strandat 868.126 kb on + strandat 868.127 kb on - strandat 868.160 kb on + strandat 868.160 kb on + strandat 868.160 kb on + strandat 868.161 kb on - strandat 868.161 kb on - strandat 868.161 kb on - strandat 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.415 kb on + strand, within SM_b21292at 868.458 kb on - strand, within SM_b21292at 868.458 kb on - strand, within SM_b21292at 868.478 kb on + strand, within SM_b21292at 868.478 kb on + strand, within SM_b21292at 868.479 kb on - strand, within SM_b21292at 868.603 kb on + strand, within SM_b21292at 868.625 kb on + strand, within SM_b21292at 868.626 kb on - strand, within SM_b21292at 868.626 kb on - strand, within SM_b21292at 868.685 kb on + strand, within SM_b21292at 868.845 kb on - strand, within SM_b21292at 868.910 kb on + strand, within SM_b21292at 868.911 kb on - strand, within SM_b21292at 868.911 kb on - strand, within SM_b21292at 868.912 kb on + strand, within SM_b21292at 868.913 kb on - strand, within SM_b21292

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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866,067 + -0.6
866,067 + -1.1
866,068 - +0.3
866,130 + -0.3
866,189 - SM_b21290 0.12 -0.9
866,189 - SM_b21290 0.12 -0.2
866,277 - SM_b21290 0.21 -0.4
866,363 - SM_b21290 0.30 +0.1
866,371 + SM_b21290 0.31 +0.5
866,372 - SM_b21290 0.31 -1.1
866,375 + SM_b21290 0.31 -0.8
866,375 + SM_b21290 0.31 -0.7
866,376 - SM_b21290 0.31 -0.4
866,399 + SM_b21290 0.34 -0.6
866,650 + SM_b21290 0.59 -0.1
866,651 - SM_b21290 0.59 +0.1
866,651 - SM_b21290 0.59 +0.2
866,651 - SM_b21290 0.59 -1.4
866,651 - SM_b21290 0.59 -1.6
866,718 - SM_b21290 0.66 -0.0
866,825 + SM_b21290 0.77 +0.1
866,870 + SM_b21290 0.82 -0.8
867,028 - -1.2
867,257 + SM_b21291 0.21 -0.1
867,258 - SM_b21291 0.21 -0.2
867,400 + SM_b21291 0.36 +0.3
867,400 + SM_b21291 0.36 +0.8
867,400 + SM_b21291 0.36 +0.6
867,401 - SM_b21291 0.36 +0.5
867,403 + SM_b21291 0.36 +0.1
867,421 + SM_b21291 0.38 +0.7
867,568 - SM_b21291 0.54 +0.7
867,617 + SM_b21291 0.59 +0.6
867,618 - SM_b21291 0.59 -0.2
867,618 - SM_b21291 0.59 +1.2
867,675 + SM_b21291 0.65 -1.1
867,812 - SM_b21291 0.79 +1.1
867,878 + SM_b21291 0.86 +1.2
868,038 + +0.1
868,126 + +1.1
868,126 + +1.3
868,127 - -0.9
868,160 + +1.6
868,160 + +0.4
868,160 + +0.1
868,161 - -0.3
868,161 - -1.6
868,161 - +0.1
868,343 + SM_b21292 0.15 -0.0
868,343 + SM_b21292 0.15 -0.6
868,343 + SM_b21292 0.15 -0.1
868,343 + SM_b21292 0.15 +1.0
868,344 - SM_b21292 0.15 -0.9
868,344 - SM_b21292 0.15 -0.2
868,344 - SM_b21292 0.15 -0.0
868,415 + SM_b21292 0.21 +0.4
868,458 - SM_b21292 0.24 +0.6
868,458 - SM_b21292 0.24 +0.0
868,478 + SM_b21292 0.26 -0.0
868,478 + SM_b21292 0.26 -0.7
868,479 - SM_b21292 0.26 +1.2
868,603 + SM_b21292 0.36 +0.4
868,625 + SM_b21292 0.38 -0.7
868,626 - SM_b21292 0.38 -1.7
868,626 - SM_b21292 0.38 +0.9
868,685 + SM_b21292 0.43 +1.3
868,845 - SM_b21292 0.56 -0.3
868,910 + SM_b21292 0.61 -0.0
868,911 - SM_b21292 0.61 +1.3
868,911 - SM_b21292 0.61 +0.1
868,912 + SM_b21292 0.61 +0.6
868,913 - SM_b21292 0.61 -0.6

Or see this region's nucleotide sequence