Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20722

Experiment: R2A control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20721 and SM_b20722 overlap by 4 nucleotidesSM_b20722 and SM_b20723 are separated by 77 nucleotides SM_b20721: SM_b20721 - two-component sensor histidine kinase, at 1,525,774 to 1,527,171 _b20721 SM_b20722: SM_b20722 - two-component response regulator protein, at 1,527,168 to 1,527,845 _b20722 SM_b20723: SM_b20723 - iron ABC transporter substrate-binding protein precursor, at 1,527,923 to 1,528,990 _b20723 Position (kb) 1527 1528Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1526.892 kb on - strand, within SM_b20721at 1527.063 kb on + strandat 1527.063 kb on + strandat 1527.064 kb on - strandat 1527.196 kb on + strandat 1527.196 kb on + strandat 1527.196 kb on + strandat 1527.197 kb on - strandat 1527.197 kb on - strandat 1527.268 kb on + strand, within SM_b20722at 1527.269 kb on - strand, within SM_b20722at 1527.269 kb on - strand, within SM_b20722at 1527.269 kb on - strand, within SM_b20722at 1527.460 kb on + strand, within SM_b20722at 1527.460 kb on + strand, within SM_b20722at 1527.536 kb on - strand, within SM_b20722at 1527.554 kb on - strand, within SM_b20722at 1527.554 kb on - strand, within SM_b20722at 1527.554 kb on - strand, within SM_b20722at 1527.839 kb on + strandat 1527.870 kb on + strandat 1527.871 kb on - strandat 1527.871 kb on - strandat 1528.038 kb on - strand, within SM_b20723at 1528.038 kb on - strand, within SM_b20723at 1528.038 kb on - strand, within SM_b20723at 1528.116 kb on - strand, within SM_b20723at 1528.142 kb on + strand, within SM_b20723at 1528.142 kb on + strand, within SM_b20723at 1528.143 kb on - strand, within SM_b20723at 1528.143 kb on - strand, within SM_b20723at 1528.241 kb on + strand, within SM_b20723at 1528.310 kb on + strand, within SM_b20723at 1528.311 kb on - strand, within SM_b20723at 1528.343 kb on + strand, within SM_b20723at 1528.344 kb on - strand, within SM_b20723at 1528.403 kb on + strand, within SM_b20723at 1528.404 kb on - strand, within SM_b20723at 1528.448 kb on + strand, within SM_b20723at 1528.448 kb on + strand, within SM_b20723at 1528.448 kb on + strand, within SM_b20723at 1528.448 kb on + strand, within SM_b20723at 1528.448 kb on + strand, within SM_b20723at 1528.449 kb on - strand, within SM_b20723at 1528.449 kb on - strand, within SM_b20723at 1528.560 kb on - strand, within SM_b20723at 1528.616 kb on + strand, within SM_b20723at 1528.616 kb on + strand, within SM_b20723at 1528.617 kb on - strandat 1528.634 kb on + strand, within SM_b20723at 1528.635 kb on - strand, within SM_b20723at 1528.678 kb on - strand, within SM_b20723at 1528.678 kb on - strand, within SM_b20723at 1528.691 kb on + strand, within SM_b20723at 1528.691 kb on + strand, within SM_b20723at 1528.692 kb on - strand, within SM_b20723at 1528.694 kb on - strand, within SM_b20723at 1528.760 kb on + strand, within SM_b20723at 1528.761 kb on - strand, within SM_b20723

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
remove
1,526,892 - SM_b20721 0.80 -0.3
1,527,063 + +2.8
1,527,063 + +0.8
1,527,064 - +0.7
1,527,196 + +0.9
1,527,196 + +1.3
1,527,196 + +0.0
1,527,197 - -0.3
1,527,197 - -2.4
1,527,268 + SM_b20722 0.15 +0.1
1,527,269 - SM_b20722 0.15 +0.5
1,527,269 - SM_b20722 0.15 +0.2
1,527,269 - SM_b20722 0.15 -0.0
1,527,460 + SM_b20722 0.43 +0.8
1,527,460 + SM_b20722 0.43 +0.4
1,527,536 - SM_b20722 0.54 +1.9
1,527,554 - SM_b20722 0.57 +0.2
1,527,554 - SM_b20722 0.57 -1.3
1,527,554 - SM_b20722 0.57 +0.2
1,527,839 + +0.0
1,527,870 + +0.5
1,527,871 - +0.3
1,527,871 - +0.1
1,528,038 - SM_b20723 0.11 -1.9
1,528,038 - SM_b20723 0.11 +0.6
1,528,038 - SM_b20723 0.11 -1.0
1,528,116 - SM_b20723 0.18 +0.0
1,528,142 + SM_b20723 0.21 +1.1
1,528,142 + SM_b20723 0.21 -0.5
1,528,143 - SM_b20723 0.21 +0.3
1,528,143 - SM_b20723 0.21 +0.9
1,528,241 + SM_b20723 0.30 +0.7
1,528,310 + SM_b20723 0.36 +0.3
1,528,311 - SM_b20723 0.36 -1.2
1,528,343 + SM_b20723 0.39 +1.2
1,528,344 - SM_b20723 0.39 -1.4
1,528,403 + SM_b20723 0.45 +0.7
1,528,404 - SM_b20723 0.45 +0.5
1,528,448 + SM_b20723 0.49 -0.4
1,528,448 + SM_b20723 0.49 -0.7
1,528,448 + SM_b20723 0.49 -0.0
1,528,448 + SM_b20723 0.49 +0.7
1,528,448 + SM_b20723 0.49 -0.4
1,528,449 - SM_b20723 0.49 -0.5
1,528,449 - SM_b20723 0.49 -0.1
1,528,560 - SM_b20723 0.60 -0.0
1,528,616 + SM_b20723 0.65 +0.0
1,528,616 + SM_b20723 0.65 -0.1
1,528,617 - +2.1
1,528,634 + SM_b20723 0.67 +1.7
1,528,635 - SM_b20723 0.67 +0.6
1,528,678 - SM_b20723 0.71 -1.4
1,528,678 - SM_b20723 0.71 -0.1
1,528,691 + SM_b20723 0.72 +0.5
1,528,691 + SM_b20723 0.72 -0.0
1,528,692 - SM_b20723 0.72 -1.9
1,528,694 - SM_b20723 0.72 -0.5
1,528,760 + SM_b20723 0.78 -0.7
1,528,761 - SM_b20723 0.78 +0.1

Or see this region's nucleotide sequence