Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20366 and SM_b20367 are separated by 495 nucleotides SM_b20367 and SM_b20368 are separated by 143 nucleotides
SM_b20366: SM_b20366 - LacI family transcriptional regulator, at 378,030 to 379,034
_b20366
SM_b20367: SM_b20367 - transcriptional regulator, at 379,530 to 380,222
_b20367
SM_b20368: SM_b20368 - hypothetical protein, at 380,366 to 381,379
_b20368
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.699 kb on + strand, within SM_b20366 at 378.888 kb on + strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.889 kb on - strand, within SM_b20366 at 378.920 kb on + strand, within SM_b20366 at 378.925 kb on + strand, within SM_b20366 at 378.926 kb on - strand, within SM_b20366 at 379.033 kb on - strand at 379.036 kb on + strand at 379.036 kb on + strand at 379.036 kb on + strand at 379.037 kb on - strand at 379.086 kb on - strand at 379.112 kb on - strand at 379.112 kb on - strand at 379.115 kb on - strand at 379.115 kb on - strand at 379.193 kb on + strand at 379.193 kb on + strand at 379.194 kb on - strand at 379.403 kb on - strand at 379.411 kb on + strand at 379.411 kb on + strand at 379.412 kb on - strand at 379.443 kb on - strand at 379.532 kb on - strand at 379.532 kb on - strand at 379.627 kb on + strand, within SM_b20367 at 379.732 kb on + strand, within SM_b20367 at 379.859 kb on - strand, within SM_b20367 at 380.075 kb on - strand, within SM_b20367 at 380.080 kb on + strand, within SM_b20367 at 380.080 kb on + strand, within SM_b20367 at 380.080 kb on + strand, within SM_b20367 at 380.081 kb on - strand, within SM_b20367 at 380.081 kb on - strand, within SM_b20367 at 380.247 kb on - strand at 380.253 kb on + strand at 380.253 kb on + strand at 380.254 kb on - strand at 380.254 kb on - strand at 380.254 kb on - strand at 380.317 kb on + strand at 380.322 kb on + strand at 380.322 kb on + strand at 380.322 kb on + strand at 380.322 kb on + strand at 380.323 kb on - strand at 380.323 kb on - strand at 380.328 kb on + strand at 380.328 kb on + strand at 380.328 kb on + strand at 380.328 kb on + strand at 380.329 kb on - strand at 380.351 kb on + strand at 380.352 kb on - strand at 380.501 kb on + strand, within SM_b20368 at 380.501 kb on + strand, within SM_b20368 at 380.502 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 381.044 kb on - strand, within SM_b20368 at 381.065 kb on - strand, within SM_b20368 at 381.074 kb on + strand, within SM_b20368 at 381.075 kb on - strand, within SM_b20368 at 381.135 kb on + strand, within SM_b20368
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 378,699 + SM_b20366 0.67 -0.3 378,888 + SM_b20366 0.85 -0.2 378,889 - SM_b20366 0.85 -0.3 378,889 - SM_b20366 0.85 +0.4 378,889 - SM_b20366 0.85 +1.1 378,920 + SM_b20366 0.89 +0.5 378,925 + SM_b20366 0.89 +1.8 378,926 - SM_b20366 0.89 -0.6 379,033 - -0.4 379,036 + +0.1 379,036 + +0.5 379,036 + -1.3 379,037 - -1.4 379,086 - +0.1 379,112 - +0.3 379,112 - -1.1 379,115 - +0.2 379,115 - +0.2 379,193 + -0.3 379,193 + +0.6 379,194 - +0.5 379,403 - -0.1 379,411 + -1.2 379,411 + -0.1 379,412 - +0.4 379,443 - -0.1 379,532 - +0.8 379,532 - +1.2 379,627 + SM_b20367 0.14 -1.4 379,732 + SM_b20367 0.29 -1.0 379,859 - SM_b20367 0.47 -0.7 380,075 - SM_b20367 0.79 -0.3 380,080 + SM_b20367 0.79 +0.2 380,080 + SM_b20367 0.79 -0.0 380,080 + SM_b20367 0.79 -0.8 380,081 - SM_b20367 0.80 -0.3 380,081 - SM_b20367 0.80 -2.4 380,247 - -1.0 380,253 + -0.5 380,253 + -0.5 380,254 - +0.4 380,254 - +0.6 380,254 - +0.9 380,317 + +0.4 380,322 + -0.1 380,322 + -0.8 380,322 + +0.7 380,322 + -0.1 380,323 - +0.2 380,323 - +0.5 380,328 + +0.1 380,328 + -0.8 380,328 + -1.0 380,328 + +0.3 380,329 - +0.2 380,351 + +0.3 380,352 - +0.3 380,501 + SM_b20368 0.13 -0.3 380,501 + SM_b20368 0.13 -0.3 380,502 - SM_b20368 0.13 -0.7 380,988 - SM_b20368 0.61 -0.2 380,988 - SM_b20368 0.61 -0.6 381,044 - SM_b20368 0.67 +0.5 381,065 - SM_b20368 0.69 -0.3 381,074 + SM_b20368 0.70 +0.0 381,075 - SM_b20368 0.70 +0.5 381,135 + SM_b20368 0.76 -0.5
Or see this region's nucleotide sequence