Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20364 and SM_b20365 are separated by 174 nucleotides SM_b20365 and SM_b20366 are separated by 177 nucleotides
SM_b20364: SM_b20364 - iron ABC transporter permease, at 374,421 to 376,649
_b20364
SM_b20365: SM_b20365 - iron ABC transporter substrate-binding protein, at 376,824 to 377,852
_b20365
SM_b20366: SM_b20366 - LacI family transcriptional regulator, at 378,030 to 379,034
_b20366
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.887 kb on - strand, within SM_b20364 at 375.887 kb on - strand, within SM_b20364 at 376.043 kb on + strand, within SM_b20364 at 376.576 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.654 kb on - strand at 376.695 kb on + strand at 376.695 kb on + strand at 376.696 kb on - strand at 376.696 kb on - strand at 376.894 kb on + strand at 376.894 kb on + strand at 376.895 kb on - strand at 376.910 kb on - strand at 376.910 kb on - strand at 377.039 kb on - strand, within SM_b20365 at 377.275 kb on + strand, within SM_b20365 at 377.329 kb on + strand, within SM_b20365 at 377.330 kb on - strand, within SM_b20365 at 377.449 kb on + strand, within SM_b20365 at 377.473 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.955 kb on - strand at 378.104 kb on + strand at 378.155 kb on - strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.262 kb on - strand, within SM_b20366 at 378.699 kb on + strand, within SM_b20366
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 375,887 - SM_b20364 0.66 +0.2 375,887 - SM_b20364 0.66 +1.1 376,043 + SM_b20364 0.73 +2.2 376,576 + -0.3 376,653 + -2.3 376,653 + -1.1 376,653 + +1.8 376,654 - +0.8 376,695 + +0.5 376,695 + +0.1 376,696 - +1.6 376,696 - +0.0 376,894 + +0.6 376,894 + +1.8 376,895 - -0.1 376,910 - +1.5 376,910 - +0.4 377,039 - SM_b20365 0.21 -0.5 377,275 + SM_b20365 0.44 -0.1 377,329 + SM_b20365 0.49 -0.1 377,330 - SM_b20365 0.49 -1.2 377,449 + SM_b20365 0.61 +0.7 377,473 + SM_b20365 0.63 +0.6 377,554 + SM_b20365 0.71 +0.5 377,554 + SM_b20365 0.71 +0.3 377,659 + SM_b20365 0.81 -1.7 377,659 + SM_b20365 0.81 -0.5 377,955 - -0.8 378,104 + -0.4 378,155 - SM_b20366 0.12 +0.4 378,236 + SM_b20366 0.20 -0.9 378,236 + SM_b20366 0.20 +0.0 378,262 - SM_b20366 0.23 +1.6 378,699 + SM_b20366 0.67 -0.3
Or see this region's nucleotide sequence