Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36330

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36325 and BPHYT_RS36330 are separated by 201 nucleotidesBPHYT_RS36330 and BPHYT_RS36335 are separated by 155 nucleotides BPHYT_RS36325: BPHYT_RS36325 - TrbL/VirB6 plasmid conjugal transfer protein, at 77,470 to 78,468 _RS36325 BPHYT_RS36330: BPHYT_RS36330 - type IV secretory protein VirB8, at 78,670 to 79,569 _RS36330 BPHYT_RS36335: BPHYT_RS36335 - hypothetical protein, at 79,725 to 80,474 _RS36335 Position (kb) 78 79 80Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 77.713 kb on + strand, within BPHYT_RS36325at 77.775 kb on + strand, within BPHYT_RS36325at 77.805 kb on + strand, within BPHYT_RS36325at 77.806 kb on - strand, within BPHYT_RS36325at 78.022 kb on - strand, within BPHYT_RS36325at 78.083 kb on - strand, within BPHYT_RS36325at 78.085 kb on + strand, within BPHYT_RS36325at 78.086 kb on - strand, within BPHYT_RS36325at 78.137 kb on + strand, within BPHYT_RS36325at 78.148 kb on + strand, within BPHYT_RS36325at 78.148 kb on + strand, within BPHYT_RS36325at 78.283 kb on + strand, within BPHYT_RS36325at 78.283 kb on + strand, within BPHYT_RS36325at 78.416 kb on - strandat 78.416 kb on - strandat 78.484 kb on - strandat 78.509 kb on - strandat 78.761 kb on + strand, within BPHYT_RS36330at 78.762 kb on - strand, within BPHYT_RS36330at 78.886 kb on + strand, within BPHYT_RS36330at 78.887 kb on - strand, within BPHYT_RS36330at 78.889 kb on + strand, within BPHYT_RS36330at 78.889 kb on + strand, within BPHYT_RS36330at 78.889 kb on + strand, within BPHYT_RS36330at 78.890 kb on - strand, within BPHYT_RS36330at 78.964 kb on + strand, within BPHYT_RS36330at 79.012 kb on + strand, within BPHYT_RS36330at 79.023 kb on - strand, within BPHYT_RS36330at 79.066 kb on + strand, within BPHYT_RS36330at 79.066 kb on + strand, within BPHYT_RS36330at 79.066 kb on + strand, within BPHYT_RS36330at 79.066 kb on + strand, within BPHYT_RS36330at 79.067 kb on - strand, within BPHYT_RS36330at 79.145 kb on - strand, within BPHYT_RS36330at 79.207 kb on + strand, within BPHYT_RS36330at 79.208 kb on - strand, within BPHYT_RS36330at 79.442 kb on + strand, within BPHYT_RS36330at 79.459 kb on + strand, within BPHYT_RS36330at 79.459 kb on + strand, within BPHYT_RS36330at 79.493 kb on - strandat 79.528 kb on - strandat 79.528 kb on - strandat 79.528 kb on - strandat 79.963 kb on - strand, within BPHYT_RS36335at 79.992 kb on + strand, within BPHYT_RS36335at 79.992 kb on + strand, within BPHYT_RS36335at 79.992 kb on + strand, within BPHYT_RS36335at 79.993 kb on - strand, within BPHYT_RS36335at 80.149 kb on - strand, within BPHYT_RS36335at 80.155 kb on - strand, within BPHYT_RS36335at 80.155 kb on - strand, within BPHYT_RS36335at 80.248 kb on + strand, within BPHYT_RS36335at 80.248 kb on + strand, within BPHYT_RS36335at 80.248 kb on + strand, within BPHYT_RS36335at 80.249 kb on - strand, within BPHYT_RS36335at 80.249 kb on - strand, within BPHYT_RS36335at 80.249 kb on - strand, within BPHYT_RS36335at 80.251 kb on - strand, within BPHYT_RS36335

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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77,713 + BPHYT_RS36325 0.24 +0.5
77,775 + BPHYT_RS36325 0.31 -0.1
77,805 + BPHYT_RS36325 0.34 +0.4
77,806 - BPHYT_RS36325 0.34 +0.2
78,022 - BPHYT_RS36325 0.55 -1.7
78,083 - BPHYT_RS36325 0.61 -1.0
78,085 + BPHYT_RS36325 0.62 +1.1
78,086 - BPHYT_RS36325 0.62 +0.8
78,137 + BPHYT_RS36325 0.67 -0.9
78,148 + BPHYT_RS36325 0.68 -0.1
78,148 + BPHYT_RS36325 0.68 +0.7
78,283 + BPHYT_RS36325 0.81 -3.2
78,283 + BPHYT_RS36325 0.81 +0.1
78,416 - +0.2
78,416 - +0.2
78,484 - +0.4
78,509 - -2.0
78,761 + BPHYT_RS36330 0.10 -0.7
78,762 - BPHYT_RS36330 0.10 +0.6
78,886 + BPHYT_RS36330 0.24 +0.3
78,887 - BPHYT_RS36330 0.24 +1.2
78,889 + BPHYT_RS36330 0.24 +1.4
78,889 + BPHYT_RS36330 0.24 +1.0
78,889 + BPHYT_RS36330 0.24 +0.6
78,890 - BPHYT_RS36330 0.24 +0.3
78,964 + BPHYT_RS36330 0.33 -1.8
79,012 + BPHYT_RS36330 0.38 -0.8
79,023 - BPHYT_RS36330 0.39 +0.4
79,066 + BPHYT_RS36330 0.44 +2.0
79,066 + BPHYT_RS36330 0.44 +0.8
79,066 + BPHYT_RS36330 0.44 -1.0
79,066 + BPHYT_RS36330 0.44 -0.0
79,067 - BPHYT_RS36330 0.44 -0.2
79,145 - BPHYT_RS36330 0.53 -0.3
79,207 + BPHYT_RS36330 0.60 +1.6
79,208 - BPHYT_RS36330 0.60 +0.1
79,442 + BPHYT_RS36330 0.86 +0.2
79,459 + BPHYT_RS36330 0.88 +0.1
79,459 + BPHYT_RS36330 0.88 +2.2
79,493 - +0.4
79,528 - +1.3
79,528 - -0.1
79,528 - +0.6
79,963 - BPHYT_RS36335 0.32 -0.7
79,992 + BPHYT_RS36335 0.36 -0.5
79,992 + BPHYT_RS36335 0.36 +3.6
79,992 + BPHYT_RS36335 0.36 -0.0
79,993 - BPHYT_RS36335 0.36 +0.7
80,149 - BPHYT_RS36335 0.57 +0.3
80,155 - BPHYT_RS36335 0.57 +0.5
80,155 - BPHYT_RS36335 0.57 -4.0
80,248 + BPHYT_RS36335 0.70 -0.3
80,248 + BPHYT_RS36335 0.70 -2.4
80,248 + BPHYT_RS36335 0.70 -1.2
80,249 - BPHYT_RS36335 0.70 +0.7
80,249 - BPHYT_RS36335 0.70 +0.4
80,249 - BPHYT_RS36335 0.70 +0.4
80,251 - BPHYT_RS36335 0.70 +0.1

Or see this region's nucleotide sequence