Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36205

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36200 and BPHYT_RS36205 overlap by 4 nucleotidesBPHYT_RS36205 and BPHYT_RS36210 overlap by 4 nucleotidesBPHYT_RS36210 and BPHYT_RS36215 are separated by 127 nucleotides BPHYT_RS36200: BPHYT_RS36200 - integrase, at 54,268 to 56,151 _RS36200 BPHYT_RS36205: BPHYT_RS36205 - integrase, at 56,148 to 58,031 _RS36205 BPHYT_RS36210: BPHYT_RS36210 - hypothetical protein, at 58,028 to 58,390 _RS36210 BPHYT_RS36215: BPHYT_RS36215 - hypothetical protein, at 58,518 to 59,036 _RS36215 Position (kb) 56 57 58 59Strain fitness (log2 ratio) -1 0 1at 58.566 kb on - strandat 58.586 kb on - strand, within BPHYT_RS36215at 58.774 kb on - strand, within BPHYT_RS36215

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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58,566 - -0.1
58,586 - BPHYT_RS36215 0.13 +0.0
58,774 - BPHYT_RS36215 0.49 -0.2

Or see this region's nucleotide sequence