Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31305 and BPHYT_RS31310 are separated by 94 nucleotides BPHYT_RS31310 and BPHYT_RS31315 are separated by 245 nucleotides BPHYT_RS31315 and BPHYT_RS31320 are separated by 71 nucleotides BPHYT_RS31320 and BPHYT_RS31325 are separated by 37 nucleotides BPHYT_RS31325 and BPHYT_RS31330 are separated by 60 nucleotides
BPHYT_RS31305: BPHYT_RS31305 - alcohol dehydrogenase, at 2,582,248 to 2,583,234
_RS31305
BPHYT_RS31310: BPHYT_RS31310 - hypothetical protein, at 2,583,329 to 2,583,604
_RS31310
BPHYT_RS31315: BPHYT_RS31315 - cytochrome C, at 2,583,850 to 2,584,185
_RS31315
BPHYT_RS31320: BPHYT_RS31320 - hypothetical protein, at 2,584,257 to 2,584,631
_RS31320
BPHYT_RS31325: BPHYT_RS31325 - hypothetical protein, at 2,584,669 to 2,585,100
_RS31325
BPHYT_RS31330: BPHYT_RS31330 - MerR family transcriptional regulator, at 2,585,161 to 2,585,466
_RS31330
Position (kb)
2583
2584
2585 Strain fitness (log2 ratio)
-1
0
1 at 2583.221 kb on - strand at 2583.734 kb on - strand at 2584.195 kb on + strand at 2584.220 kb on + strand at 2584.412 kb on + strand, within BPHYT_RS31320 at 2585.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 2,583,221 - -0.0 2,583,734 - -0.2 2,584,195 + -0.3 2,584,220 + +0.5 2,584,412 + BPHYT_RS31320 0.41 +0.3 2,585,121 - -1.5
Or see this region's nucleotide sequence