Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31315

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31305 and BPHYT_RS31310 are separated by 94 nucleotidesBPHYT_RS31310 and BPHYT_RS31315 are separated by 245 nucleotidesBPHYT_RS31315 and BPHYT_RS31320 are separated by 71 nucleotidesBPHYT_RS31320 and BPHYT_RS31325 are separated by 37 nucleotidesBPHYT_RS31325 and BPHYT_RS31330 are separated by 60 nucleotides BPHYT_RS31305: BPHYT_RS31305 - alcohol dehydrogenase, at 2,582,248 to 2,583,234 _RS31305 BPHYT_RS31310: BPHYT_RS31310 - hypothetical protein, at 2,583,329 to 2,583,604 _RS31310 BPHYT_RS31315: BPHYT_RS31315 - cytochrome C, at 2,583,850 to 2,584,185 _RS31315 BPHYT_RS31320: BPHYT_RS31320 - hypothetical protein, at 2,584,257 to 2,584,631 _RS31320 BPHYT_RS31325: BPHYT_RS31325 - hypothetical protein, at 2,584,669 to 2,585,100 _RS31325 BPHYT_RS31330: BPHYT_RS31330 - MerR family transcriptional regulator, at 2,585,161 to 2,585,466 _RS31330 Position (kb) 2583 2584 2585Strain fitness (log2 ratio) -1 0 1at 2583.221 kb on - strandat 2583.734 kb on - strandat 2584.195 kb on + strandat 2584.220 kb on + strandat 2584.412 kb on + strand, within BPHYT_RS31320at 2585.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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2,583,221 - -0.0
2,583,734 - -0.2
2,584,195 + -0.3
2,584,220 + +0.5
2,584,412 + BPHYT_RS31320 0.41 +0.3
2,585,121 - -1.5

Or see this region's nucleotide sequence