Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28325 and BPHYT_RS28330 are separated by 323 nucleotides BPHYT_RS28330 and BPHYT_RS28335 are separated by 134 nucleotides BPHYT_RS28335 and BPHYT_RS28340 overlap by 20 nucleotides
BPHYT_RS28325: BPHYT_RS28325 - NADPH-dependent FMN reductase, at 1,908,365 to 1,909,024
_RS28325
BPHYT_RS28330: BPHYT_RS28330 - transcriptional regulator, at 1,909,348 to 1,909,563
_RS28330
BPHYT_RS28335: BPHYT_RS28335 - hypothetical protein, at 1,909,698 to 1,910,651
_RS28335
BPHYT_RS28340: BPHYT_RS28340 - indole acetimide hydrolase, at 1,910,632 to 1,912,086
_RS28340
Position (kb) 1909
1910
1911 Strain fitness (log2 ratio) -1
0
1
2
3 at 1908.701 kb on + strand, within BPHYT_RS28325 at 1909.022 kb on + strand at 1909.023 kb on - strand at 1909.360 kb on - strand at 1909.519 kb on + strand, within BPHYT_RS28330 at 1909.561 kb on + strand at 1909.688 kb on + strand at 1909.836 kb on + strand, within BPHYT_RS28335 at 1909.956 kb on - strand, within BPHYT_RS28335 at 1910.091 kb on + strand, within BPHYT_RS28335 at 1910.137 kb on - strand, within BPHYT_RS28335 at 1910.137 kb on - strand, within BPHYT_RS28335 at 1910.139 kb on - strand, within BPHYT_RS28335 at 1911.013 kb on - strand, within BPHYT_RS28340 at 1911.259 kb on + strand, within BPHYT_RS28340 at 1911.294 kb on + strand, within BPHYT_RS28340 at 1911.356 kb on + strand, within BPHYT_RS28340 at 1911.357 kb on - strand, within BPHYT_RS28340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,908,701 + BPHYT_RS28325 0.51 +0.3 1,909,022 + +2.8 1,909,023 - +1.3 1,909,360 - +0.6 1,909,519 + BPHYT_RS28330 0.79 -1.4 1,909,561 + -0.6 1,909,688 + -0.1 1,909,836 + BPHYT_RS28335 0.14 -0.0 1,909,956 - BPHYT_RS28335 0.27 +0.6 1,910,091 + BPHYT_RS28335 0.41 -0.2 1,910,137 - BPHYT_RS28335 0.46 +0.1 1,910,137 - BPHYT_RS28335 0.46 -0.1 1,910,139 - BPHYT_RS28335 0.46 -1.0 1,911,013 - BPHYT_RS28340 0.26 -1.3 1,911,259 + BPHYT_RS28340 0.43 -0.9 1,911,294 + BPHYT_RS28340 0.45 -0.1 1,911,356 + BPHYT_RS28340 0.50 +1.0 1,911,357 - BPHYT_RS28340 0.50 -0.9
Or see this region's nucleotide sequence