Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27685 and BPHYT_RS27690 are separated by 9 nucleotides BPHYT_RS27690 and BPHYT_RS27695 are separated by 81 nucleotides BPHYT_RS27695 and BPHYT_RS27700 are separated by 159 nucleotides
BPHYT_RS27685: BPHYT_RS27685 - ornithine carbamoyltransferase, at 1,777,157 to 1,778,155
_RS27685
BPHYT_RS27690: BPHYT_RS27690 - carbamate kinase, at 1,778,165 to 1,779,073
_RS27690
BPHYT_RS27695: BPHYT_RS27695 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 1,779,155 to 1,780,558
_RS27695
BPHYT_RS27700: BPHYT_RS27700 - universal stress protein A, at 1,780,718 to 1,781,554
_RS27700
Position (kb) 1779
1780
1781 Strain fitness (log2 ratio) -1
0
1
2 at 1778.549 kb on + strand, within BPHYT_RS27690 at 1778.785 kb on + strand, within BPHYT_RS27690 at 1779.079 kb on + strand at 1779.079 kb on + strand at 1779.408 kb on - strand, within BPHYT_RS27695 at 1779.408 kb on - strand, within BPHYT_RS27695 at 1779.408 kb on - strand, within BPHYT_RS27695 at 1780.384 kb on - strand, within BPHYT_RS27695 at 1780.403 kb on + strand, within BPHYT_RS27695 at 1780.435 kb on - strand at 1780.435 kb on - strand at 1780.724 kb on + strand at 1780.724 kb on + strand at 1780.827 kb on + strand, within BPHYT_RS27700 at 1780.830 kb on - strand, within BPHYT_RS27700 at 1780.830 kb on - strand, within BPHYT_RS27700 at 1780.886 kb on + strand, within BPHYT_RS27700 at 1780.890 kb on - strand, within BPHYT_RS27700 at 1781.176 kb on + strand, within BPHYT_RS27700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,778,549 + BPHYT_RS27690 0.42 -0.2 1,778,785 + BPHYT_RS27690 0.68 +0.5 1,779,079 + +1.9 1,779,079 + +0.4 1,779,408 - BPHYT_RS27695 0.18 +0.3 1,779,408 - BPHYT_RS27695 0.18 -0.8 1,779,408 - BPHYT_RS27695 0.18 +1.0 1,780,384 - BPHYT_RS27695 0.88 -0.0 1,780,403 + BPHYT_RS27695 0.89 -0.6 1,780,435 - +1.8 1,780,435 - +1.3 1,780,724 + -1.5 1,780,724 + -0.1 1,780,827 + BPHYT_RS27700 0.13 +0.0 1,780,830 - BPHYT_RS27700 0.13 +0.0 1,780,830 - BPHYT_RS27700 0.13 +0.0 1,780,886 + BPHYT_RS27700 0.20 -0.5 1,780,890 - BPHYT_RS27700 0.21 +0.5 1,781,176 + BPHYT_RS27700 0.55 -1.7
Or see this region's nucleotide sequence