Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26420 and BPHYT_RS26425 are separated by 197 nucleotides BPHYT_RS26425 and BPHYT_RS26430 are separated by 75 nucleotides BPHYT_RS26430 and BPHYT_RS26435 overlap by 41 nucleotides
BPHYT_RS26420: BPHYT_RS26420 - phytochelatin synthase, at 1,499,983 to 1,500,837
_RS26420
BPHYT_RS26425: BPHYT_RS26425 - Fe-S protein, at 1,501,035 to 1,501,199
_RS26425
BPHYT_RS26430: BPHYT_RS26430 - diguanylate cyclase, at 1,501,275 to 1,502,420
_RS26430
BPHYT_RS26435: BPHYT_RS26435 - hypothetical protein, at 1,502,380 to 1,503,108
_RS26435
Position (kb) 1501
1502
1503 Strain fitness (log2 ratio) -1
0
1 at 1500.504 kb on - strand, within BPHYT_RS26420 at 1501.404 kb on - strand, within BPHYT_RS26430 at 1501.795 kb on + strand, within BPHYT_RS26430 at 1501.831 kb on + strand, within BPHYT_RS26430 at 1501.888 kb on - strand, within BPHYT_RS26430 at 1502.216 kb on - strand, within BPHYT_RS26430 at 1502.394 kb on - strand at 1502.942 kb on + strand, within BPHYT_RS26435 at 1502.952 kb on + strand, within BPHYT_RS26435 at 1503.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,500,504 - BPHYT_RS26420 0.61 +0.4 1,501,404 - BPHYT_RS26430 0.11 +0.2 1,501,795 + BPHYT_RS26430 0.45 +0.3 1,501,831 + BPHYT_RS26430 0.49 -0.2 1,501,888 - BPHYT_RS26430 0.53 -0.1 1,502,216 - BPHYT_RS26430 0.82 +0.6 1,502,394 - -1.0 1,502,942 + BPHYT_RS26435 0.77 +0.4 1,502,952 + BPHYT_RS26435 0.78 -1.3 1,503,104 + +0.6
Or see this region's nucleotide sequence