Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26045 and BPHYT_RS26050 are separated by 1 nucleotides BPHYT_RS26050 and BPHYT_RS26055 are separated by 40 nucleotides
BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112
_RS26040
BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091
_RS26045
BPHYT_RS26050: BPHYT_RS26050 - ABC transporter permease, at 1,419,093 to 1,420,208
_RS26050
BPHYT_RS26055: BPHYT_RS26055 - ABC transporter substrate-binding protein, at 1,420,249 to 1,421,346
_RS26055
Position (kb) 1419
1420
1421 Strain fitness (log2 ratio) -1
0
1 at 1418.118 kb on - strand at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.284 kb on - strand, within BPHYT_RS26045 at 1419.092 kb on - strand at 1419.092 kb on - strand at 1419.365 kb on - strand, within BPHYT_RS26050 at 1419.878 kb on + strand, within BPHYT_RS26050 at 1419.879 kb on - strand, within BPHYT_RS26050 at 1420.280 kb on + strand at 1420.548 kb on - strand, within BPHYT_RS26055 at 1420.584 kb on - strand, within BPHYT_RS26055 at 1420.935 kb on - strand, within BPHYT_RS26055
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,418,118 - -0.9 1,418,278 - BPHYT_RS26045 0.11 +0.7 1,418,278 - BPHYT_RS26045 0.11 +0.3 1,418,284 - BPHYT_RS26045 0.12 -0.1 1,419,092 - +0.3 1,419,092 - -0.3 1,419,365 - BPHYT_RS26050 0.24 +1.3 1,419,878 + BPHYT_RS26050 0.70 +0.6 1,419,879 - BPHYT_RS26050 0.70 +0.2 1,420,280 + +0.0 1,420,548 - BPHYT_RS26055 0.27 -1.7 1,420,584 - BPHYT_RS26055 0.31 -0.3 1,420,935 - BPHYT_RS26055 0.62 +0.2
Or see this region's nucleotide sequence