Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25700 and BPHYT_RS25705 are separated by 20 nucleotides BPHYT_RS25705 and BPHYT_RS25710 are separated by 231 nucleotides BPHYT_RS25710 and BPHYT_RS25715 are separated by 153 nucleotides
BPHYT_RS25700: BPHYT_RS25700 - MFS transporter, at 1,338,296 to 1,339,696
_RS25700
BPHYT_RS25705: BPHYT_RS25705 - aldehyde dehydrogenase, at 1,339,717 to 1,341,228
_RS25705
BPHYT_RS25710: BPHYT_RS25710 - hypothetical protein, at 1,341,460 to 1,341,675
_RS25710
BPHYT_RS25715: BPHYT_RS25715 - transposase, at 1,341,829 to 1,343,262
_RS25715
Position (kb) 1339
1340
1341
1342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1338.860 kb on + strand, within BPHYT_RS25700 at 1339.108 kb on + strand, within BPHYT_RS25700 at 1339.406 kb on + strand, within BPHYT_RS25700 at 1339.407 kb on - strand, within BPHYT_RS25700 at 1339.716 kb on + strand at 1339.717 kb on - strand at 1340.075 kb on - strand, within BPHYT_RS25705 at 1340.244 kb on + strand, within BPHYT_RS25705 at 1340.691 kb on - strand, within BPHYT_RS25705 at 1341.105 kb on - strand at 1341.274 kb on + strand at 1341.275 kb on - strand at 1341.404 kb on - strand at 1341.412 kb on + strand at 1341.616 kb on + strand, within BPHYT_RS25710 at 1341.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,338,860 + BPHYT_RS25700 0.40 -0.0 1,339,108 + BPHYT_RS25700 0.58 +0.9 1,339,406 + BPHYT_RS25700 0.79 +0.3 1,339,407 - BPHYT_RS25700 0.79 -0.2 1,339,716 + -2.2 1,339,717 - -0.1 1,340,075 - BPHYT_RS25705 0.24 +1.8 1,340,244 + BPHYT_RS25705 0.35 +0.6 1,340,691 - BPHYT_RS25705 0.64 -2.3 1,341,105 - -0.1 1,341,274 + -1.6 1,341,275 - -0.2 1,341,404 - -0.2 1,341,412 + +0.4 1,341,616 + BPHYT_RS25710 0.72 +0.1 1,341,679 + -0.3
Or see this region's nucleotide sequence