Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24640

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24635 and BPHYT_RS24640 are separated by 12 nucleotidesBPHYT_RS24640 and BPHYT_RS24645 are separated by 78 nucleotidesBPHYT_RS24645 and BPHYT_RS24650 are separated by 2 nucleotides BPHYT_RS24635: BPHYT_RS24635 - aldehyde dehydrogenase, at 1,096,405 to 1,098,657 _RS24635 BPHYT_RS24640: BPHYT_RS24640 - alcohol dehydrogenase, at 1,098,670 to 1,099,950 _RS24640 BPHYT_RS24645: BPHYT_RS24645 - amino acid ABC transporter permease, at 1,100,029 to 1,100,685 _RS24645 BPHYT_RS24650: BPHYT_RS24650 - polar amino acid ABC transporter permease, at 1,100,688 to 1,101,434 _RS24650 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1097.803 kb on + strand, within BPHYT_RS24635at 1097.804 kb on - strand, within BPHYT_RS24635at 1097.812 kb on + strand, within BPHYT_RS24635at 1097.816 kb on - strand, within BPHYT_RS24635at 1097.819 kb on - strand, within BPHYT_RS24635at 1097.999 kb on - strand, within BPHYT_RS24635at 1097.999 kb on - strand, within BPHYT_RS24635at 1098.416 kb on - strand, within BPHYT_RS24635at 1098.513 kb on + strandat 1098.778 kb on + strandat 1098.878 kb on - strand, within BPHYT_RS24640at 1098.878 kb on - strand, within BPHYT_RS24640at 1098.924 kb on + strand, within BPHYT_RS24640at 1099.051 kb on + strand, within BPHYT_RS24640at 1099.255 kb on - strand, within BPHYT_RS24640at 1099.495 kb on - strand, within BPHYT_RS24640at 1099.519 kb on + strand, within BPHYT_RS24640at 1099.520 kb on - strand, within BPHYT_RS24640at 1099.570 kb on + strand, within BPHYT_RS24640at 1099.634 kb on - strand, within BPHYT_RS24640at 1099.635 kb on + strand, within BPHYT_RS24640at 1100.387 kb on + strand, within BPHYT_RS24645at 1100.388 kb on - strand, within BPHYT_RS24645at 1100.519 kb on + strand, within BPHYT_RS24645at 1100.520 kb on - strand, within BPHYT_RS24645at 1100.520 kb on - strand, within BPHYT_RS24645at 1100.532 kb on + strand, within BPHYT_RS24645at 1100.744 kb on + strandat 1100.843 kb on - strand, within BPHYT_RS24650at 1100.863 kb on + strand, within BPHYT_RS24650at 1100.864 kb on - strand, within BPHYT_RS24650at 1100.915 kb on + strand, within BPHYT_RS24650at 1100.915 kb on + strand, within BPHYT_RS24650at 1100.915 kb on + strand, within BPHYT_RS24650

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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1,097,803 + BPHYT_RS24635 0.62 -0.7
1,097,804 - BPHYT_RS24635 0.62 -2.8
1,097,812 + BPHYT_RS24635 0.62 +0.8
1,097,816 - BPHYT_RS24635 0.63 -0.3
1,097,819 - BPHYT_RS24635 0.63 +0.9
1,097,999 - BPHYT_RS24635 0.71 -0.5
1,097,999 - BPHYT_RS24635 0.71 -1.8
1,098,416 - BPHYT_RS24635 0.89 -1.0
1,098,513 + +0.4
1,098,778 + +0.9
1,098,878 - BPHYT_RS24640 0.16 -2.3
1,098,878 - BPHYT_RS24640 0.16 +2.7
1,098,924 + BPHYT_RS24640 0.20 +0.4
1,099,051 + BPHYT_RS24640 0.30 -1.6
1,099,255 - BPHYT_RS24640 0.46 +0.4
1,099,495 - BPHYT_RS24640 0.64 -0.7
1,099,519 + BPHYT_RS24640 0.66 -0.2
1,099,520 - BPHYT_RS24640 0.66 -0.3
1,099,570 + BPHYT_RS24640 0.70 +1.4
1,099,634 - BPHYT_RS24640 0.75 +0.8
1,099,635 + BPHYT_RS24640 0.75 -1.9
1,100,387 + BPHYT_RS24645 0.54 -0.4
1,100,388 - BPHYT_RS24645 0.55 -0.2
1,100,519 + BPHYT_RS24645 0.75 +0.1
1,100,520 - BPHYT_RS24645 0.75 +1.6
1,100,520 - BPHYT_RS24645 0.75 -0.1
1,100,532 + BPHYT_RS24645 0.77 -0.4
1,100,744 + -0.9
1,100,843 - BPHYT_RS24650 0.21 +0.1
1,100,863 + BPHYT_RS24650 0.23 +0.8
1,100,864 - BPHYT_RS24650 0.24 +1.4
1,100,915 + BPHYT_RS24650 0.30 -2.1
1,100,915 + BPHYT_RS24650 0.30 +0.2
1,100,915 + BPHYT_RS24650 0.30 +0.3

Or see this region's nucleotide sequence