Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22760

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22755 and BPHYT_RS22760 are separated by 193 nucleotidesBPHYT_RS22760 and BPHYT_RS22765 are separated by 11 nucleotides BPHYT_RS22755: BPHYT_RS22755 - LacI family transcription regulator, at 662,413 to 663,444 _RS22755 BPHYT_RS22760: BPHYT_RS22760 - sugar ABC transporter ATP-binding protein, at 663,638 to 664,792 _RS22760 BPHYT_RS22765: BPHYT_RS22765 - beta-galactosidase, at 664,804 to 666,786 _RS22765 Position (kb) 663 664 665Strain fitness (log2 ratio) -1 0 1at 663.224 kb on + strand, within BPHYT_RS22755at 663.655 kb on - strandat 664.328 kb on + strand, within BPHYT_RS22760at 664.619 kb on + strand, within BPHYT_RS22760at 664.620 kb on - strand, within BPHYT_RS22760at 664.620 kb on - strand, within BPHYT_RS22760at 664.822 kb on + strandat 665.704 kb on + strand, within BPHYT_RS22765

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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663,224 + BPHYT_RS22755 0.79 +0.2
663,655 - -0.3
664,328 + BPHYT_RS22760 0.60 +0.3
664,619 + BPHYT_RS22760 0.85 +1.2
664,620 - BPHYT_RS22760 0.85 -0.5
664,620 - BPHYT_RS22760 0.85 -0.0
664,822 + +1.1
665,704 + BPHYT_RS22765 0.45 -0.0

Or see this region's nucleotide sequence