Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22550 and BPHYT_RS22555 are separated by 138 nucleotides BPHYT_RS22555 and BPHYT_RS22560 are separated by 14 nucleotides BPHYT_RS22560 and BPHYT_RS22565 are separated by 533 nucleotides
BPHYT_RS22550: BPHYT_RS22550 - manganese transporter, at 620,596 to 621,924
_RS22550
BPHYT_RS22555: BPHYT_RS22555 - transcriptional regulator, at 622,063 to 622,632
_RS22555
BPHYT_RS22560: BPHYT_RS22560 - flagellar transcriptional regulator FlhD, at 622,647 to 622,967
_RS22560
BPHYT_RS22565: BPHYT_RS22565 - membrane protein, at 623,501 to 624,724
_RS22565
Position (kb) 622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.948 kb on - strand at 622.325 kb on - strand, within BPHYT_RS22555 at 622.325 kb on - strand, within BPHYT_RS22555 at 622.328 kb on + strand, within BPHYT_RS22555 at 622.329 kb on - strand, within BPHYT_RS22555 at 622.403 kb on + strand, within BPHYT_RS22555 at 622.442 kb on + strand, within BPHYT_RS22555 at 622.442 kb on + strand, within BPHYT_RS22555 at 622.594 kb on + strand at 622.649 kb on - strand at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.896 kb on - strand, within BPHYT_RS22560 at 622.994 kb on - strand at 622.996 kb on + strand at 623.017 kb on + strand at 623.073 kb on + strand at 623.133 kb on - strand at 623.173 kb on + strand at 623.223 kb on + strand at 623.386 kb on + strand at 623.393 kb on + strand at 623.567 kb on + strand at 623.638 kb on - strand, within BPHYT_RS22565 at 623.650 kb on + strand, within BPHYT_RS22565 at 623.821 kb on + strand, within BPHYT_RS22565 at 623.821 kb on + strand, within BPHYT_RS22565 at 623.822 kb on - strand, within BPHYT_RS22565
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 621,948 - +0.1 622,325 - BPHYT_RS22555 0.46 +0.7 622,325 - BPHYT_RS22555 0.46 -0.2 622,328 + BPHYT_RS22555 0.46 -1.9 622,329 - BPHYT_RS22555 0.47 +0.2 622,403 + BPHYT_RS22555 0.60 -1.4 622,442 + BPHYT_RS22555 0.66 -0.2 622,442 + BPHYT_RS22555 0.66 -0.9 622,594 + -1.9 622,649 - +0.4 622,896 - BPHYT_RS22560 0.78 +0.9 622,896 - BPHYT_RS22560 0.78 +2.6 622,896 - BPHYT_RS22560 0.78 +0.8 622,896 - BPHYT_RS22560 0.78 -0.0 622,896 - BPHYT_RS22560 0.78 +1.8 622,994 - -2.6 622,996 + -0.3 623,017 + +0.2 623,073 + -0.9 623,133 - +1.0 623,173 + +0.4 623,223 + +0.2 623,386 + +0.8 623,393 + -0.1 623,567 + -1.1 623,638 - BPHYT_RS22565 0.11 +0.5 623,650 + BPHYT_RS22565 0.12 +0.1 623,821 + BPHYT_RS22565 0.26 -1.0 623,821 + BPHYT_RS22565 0.26 +0.6 623,822 - BPHYT_RS22565 0.26 -1.5
Or see this region's nucleotide sequence