Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22370 and BPHYT_RS22375 overlap by 8 nucleotides BPHYT_RS22375 and BPHYT_RS22380 are separated by 229 nucleotides
BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452
_RS22370
BPHYT_RS22375: BPHYT_RS22375 - 4-hydroxybenzoyl-CoA thioesterase, at 576,445 to 576,954
_RS22375
BPHYT_RS22380: BPHYT_RS22380 - Carnitine 3-dehydrogenase (EC 1.1.1.108) <small>(from data)</small>, at 577,184 to 578,149
_RS22380
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1 at 575.652 kb on - strand, within BPHYT_RS22370 at 575.652 kb on - strand, within BPHYT_RS22370 at 575.817 kb on + strand, within BPHYT_RS22370 at 575.907 kb on + strand, within BPHYT_RS22370 at 575.916 kb on + strand, within BPHYT_RS22370 at 575.916 kb on + strand, within BPHYT_RS22370 at 576.347 kb on - strand, within BPHYT_RS22370 at 576.672 kb on - strand, within BPHYT_RS22375 at 576.752 kb on + strand, within BPHYT_RS22375 at 576.753 kb on - strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.760 kb on - strand, within BPHYT_RS22375 at 576.776 kb on + strand, within BPHYT_RS22375 at 576.777 kb on - strand, within BPHYT_RS22375 at 576.866 kb on + strand, within BPHYT_RS22375 at 576.867 kb on - strand, within BPHYT_RS22375 at 576.893 kb on + strand, within BPHYT_RS22375 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.441 kb on - strand, within BPHYT_RS22380 at 577.636 kb on - strand, within BPHYT_RS22380 at 577.711 kb on - strand, within BPHYT_RS22380 at 577.767 kb on + strand, within BPHYT_RS22380 at 577.925 kb on - strand, within BPHYT_RS22380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 575,652 - BPHYT_RS22370 0.17 -0.4 575,652 - BPHYT_RS22370 0.17 -0.9 575,817 + BPHYT_RS22370 0.34 -1.1 575,907 + BPHYT_RS22370 0.43 +1.1 575,916 + BPHYT_RS22370 0.44 +0.8 575,916 + BPHYT_RS22370 0.44 -0.1 576,347 - BPHYT_RS22370 0.89 -0.3 576,672 - BPHYT_RS22375 0.45 +0.1 576,752 + BPHYT_RS22375 0.60 +0.6 576,753 - BPHYT_RS22375 0.60 -1.5 576,759 + BPHYT_RS22375 0.62 -0.7 576,759 + BPHYT_RS22375 0.62 -0.8 576,760 - BPHYT_RS22375 0.62 -0.4 576,776 + BPHYT_RS22375 0.65 -2.0 576,777 - BPHYT_RS22375 0.65 -0.6 576,866 + BPHYT_RS22375 0.83 -0.7 576,867 - BPHYT_RS22375 0.83 +0.2 576,893 + BPHYT_RS22375 0.88 -0.0 577,440 + BPHYT_RS22380 0.27 -0.9 577,440 + BPHYT_RS22380 0.27 -0.1 577,441 - BPHYT_RS22380 0.27 +1.6 577,636 - BPHYT_RS22380 0.47 -0.3 577,711 - BPHYT_RS22380 0.55 -0.4 577,767 + BPHYT_RS22380 0.60 -0.5 577,925 - BPHYT_RS22380 0.77 +0.1
Or see this region's nucleotide sequence