Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21495

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21490 and BPHYT_RS21495 overlap by 4 nucleotidesBPHYT_RS21495 and BPHYT_RS21500 overlap by 4 nucleotidesBPHYT_RS21500 and BPHYT_RS21505 are separated by 78 nucleotides BPHYT_RS21490: BPHYT_RS21490 - ABC transporter permease, at 380,697 to 382,637 _RS21490 BPHYT_RS21495: BPHYT_RS21495 - ABC transporter, at 382,634 to 383,443 _RS21495 BPHYT_RS21500: BPHYT_RS21500 - ABC transporter, at 383,440 to 384,153 _RS21500 BPHYT_RS21505: BPHYT_RS21505 - amidohydrolase, at 384,232 to 385,431 _RS21505 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1at 381.853 kb on - strand, within BPHYT_RS21490at 381.979 kb on - strand, within BPHYT_RS21490at 382.113 kb on + strand, within BPHYT_RS21490at 382.116 kb on + strand, within BPHYT_RS21490at 382.116 kb on + strand, within BPHYT_RS21490at 382.474 kb on - strandat 382.633 kb on + strandat 383.033 kb on - strand, within BPHYT_RS21495at 383.496 kb on + strandat 384.061 kb on + strand, within BPHYT_RS21500

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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381,853 - BPHYT_RS21490 0.60 +1.2
381,979 - BPHYT_RS21490 0.66 +0.2
382,113 + BPHYT_RS21490 0.73 +1.3
382,116 + BPHYT_RS21490 0.73 +0.3
382,116 + BPHYT_RS21490 0.73 -2.3
382,474 - -2.0
382,633 + -0.9
383,033 - BPHYT_RS21495 0.49 -3.6
383,496 + +0.2
384,061 + BPHYT_RS21500 0.87 -1.1

Or see this region's nucleotide sequence