Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20075

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20070 and BPHYT_RS20075 are separated by 335 nucleotidesBPHYT_RS20075 and BPHYT_RS20080 are separated by 510 nucleotides BPHYT_RS20070: BPHYT_RS20070 - hypothetical protein, at 45,686 to 47,119 _RS20070 BPHYT_RS20075: BPHYT_RS20075 - hypothetical protein, at 47,455 to 47,667 _RS20075 BPHYT_RS20080: BPHYT_RS20080 - ABC transporter permease, at 48,178 to 49,041 _RS20080 Position (kb) 47 48Strain fitness (log2 ratio) -1 0 1at 46.883 kb on + strandat 47.148 kb on + strandat 47.473 kb on + strandat 48.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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46,883 + -0.8
47,148 + -1.4
47,473 + +0.4
48,157 + -0.8

Or see this region's nucleotide sequence