Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19945 and BPHYT_RS19950 are separated by 67 nucleotides BPHYT_RS19950 and BPHYT_RS19955 overlap by 4 nucleotides BPHYT_RS19955 and BPHYT_RS19960 are separated by 100 nucleotides
BPHYT_RS19945: BPHYT_RS19945 - hypothetical protein, at 20,520 to 21,017
_RS19945
BPHYT_RS19950: BPHYT_RS19950 - hypothetical protein, at 21,085 to 21,342
_RS19950
BPHYT_RS19955: BPHYT_RS19955 - LysR family transcriptional regulator, at 21,339 to 22,217
_RS19955
BPHYT_RS19960: BPHYT_RS19960 - class A beta-lactamase, at 22,318 to 23,265
_RS19960
Position (kb) 21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 20.106 kb on + strand at 20.107 kb on - strand at 20.120 kb on - strand at 20.120 kb on - strand at 20.643 kb on + strand, within BPHYT_RS19945 at 20.670 kb on + strand, within BPHYT_RS19945 at 20.778 kb on + strand, within BPHYT_RS19945 at 21.200 kb on - strand, within BPHYT_RS19950 at 21.203 kb on + strand, within BPHYT_RS19950 at 21.203 kb on + strand, within BPHYT_RS19950 at 21.203 kb on + strand, within BPHYT_RS19950 at 21.203 kb on + strand, within BPHYT_RS19950 at 21.204 kb on - strand, within BPHYT_RS19950 at 21.204 kb on - strand, within BPHYT_RS19950 at 21.204 kb on - strand, within BPHYT_RS19950 at 22.053 kb on + strand, within BPHYT_RS19955 at 22.089 kb on + strand, within BPHYT_RS19955 at 22.090 kb on - strand, within BPHYT_RS19955 at 22.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 20,106 + -1.0 20,107 - -0.3 20,120 - -1.1 20,120 - -2.3 20,643 + BPHYT_RS19945 0.25 -1.9 20,670 + BPHYT_RS19945 0.30 -1.4 20,778 + BPHYT_RS19945 0.52 -2.3 21,200 - BPHYT_RS19950 0.45 +0.0 21,203 + BPHYT_RS19950 0.46 -0.1 21,203 + BPHYT_RS19950 0.46 -0.7 21,203 + BPHYT_RS19950 0.46 -0.4 21,203 + BPHYT_RS19950 0.46 -2.3 21,204 - BPHYT_RS19950 0.46 +0.2 21,204 - BPHYT_RS19950 0.46 +0.7 21,204 - BPHYT_RS19950 0.46 -0.8 22,053 + BPHYT_RS19955 0.81 -0.7 22,089 + BPHYT_RS19955 0.85 -0.2 22,090 - BPHYT_RS19955 0.85 -1.3 22,255 + -0.2
Or see this region's nucleotide sequence