Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18865 and BPHYT_RS18870 are separated by 36 nucleotides BPHYT_RS18870 and BPHYT_RS18875 are separated by 12 nucleotides BPHYT_RS18875 and BPHYT_RS18880 are separated by 20 nucleotides
BPHYT_RS18865: BPHYT_RS18865 - flagellar L-ring protein FlgH, at 4,240,194 to 4,240,892
_RS18865
BPHYT_RS18870: BPHYT_RS18870 - flagellar basal body rod protein FlgG, at 4,240,929 to 4,241,717
_RS18870
BPHYT_RS18875: BPHYT_RS18875 - flagellar basal body rod protein FlgF, at 4,241,730 to 4,242,488
_RS18875
BPHYT_RS18880: BPHYT_RS18880 - flagellar hook protein FlgE, at 4,242,509 to 4,244,020
_RS18880
Position (kb) 4241
4242
4243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4240.875 kb on - strand at 4240.909 kb on + strand at 4240.930 kb on + strand at 4240.930 kb on + strand at 4240.930 kb on + strand at 4240.931 kb on - strand at 4241.000 kb on - strand at 4241.065 kb on + strand, within BPHYT_RS18870 at 4241.065 kb on + strand, within BPHYT_RS18870 at 4241.066 kb on - strand, within BPHYT_RS18870 at 4241.378 kb on - strand, within BPHYT_RS18870 at 4241.476 kb on + strand, within BPHYT_RS18870 at 4241.477 kb on - strand, within BPHYT_RS18870 at 4241.582 kb on - strand, within BPHYT_RS18870 at 4241.701 kb on + strand at 4241.701 kb on + strand at 4241.701 kb on + strand at 4241.702 kb on - strand at 4241.735 kb on + strand at 4241.736 kb on - strand at 4241.736 kb on - strand at 4242.175 kb on + strand, within BPHYT_RS18875 at 4242.176 kb on - strand, within BPHYT_RS18875 at 4242.274 kb on + strand, within BPHYT_RS18875 at 4242.274 kb on + strand, within BPHYT_RS18875 at 4242.275 kb on - strand, within BPHYT_RS18875 at 4242.511 kb on - strand at 4242.511 kb on - strand at 4242.574 kb on - strand at 4242.574 kb on - strand at 4242.574 kb on - strand at 4242.909 kb on + strand, within BPHYT_RS18880 at 4242.909 kb on + strand, within BPHYT_RS18880 at 4242.909 kb on + strand, within BPHYT_RS18880 at 4242.910 kb on - strand, within BPHYT_RS18880 at 4242.987 kb on + strand, within BPHYT_RS18880 at 4242.987 kb on + strand, within BPHYT_RS18880 at 4242.987 kb on + strand, within BPHYT_RS18880 at 4243.140 kb on + strand, within BPHYT_RS18880 at 4243.140 kb on + strand, within BPHYT_RS18880 at 4243.140 kb on + strand, within BPHYT_RS18880 at 4243.176 kb on + strand, within BPHYT_RS18880 at 4243.176 kb on + strand, within BPHYT_RS18880 at 4243.176 kb on + strand, within BPHYT_RS18880 at 4243.197 kb on + strand, within BPHYT_RS18880 at 4243.198 kb on - strand, within BPHYT_RS18880 at 4243.203 kb on + strand, within BPHYT_RS18880 at 4243.203 kb on + strand, within BPHYT_RS18880 at 4243.203 kb on + strand, within BPHYT_RS18880 at 4243.204 kb on - strand, within BPHYT_RS18880 at 4243.333 kb on - strand, within BPHYT_RS18880 at 4243.410 kb on + strand, within BPHYT_RS18880 at 4243.410 kb on + strand, within BPHYT_RS18880 at 4243.411 kb on - strand, within BPHYT_RS18880 at 4243.411 kb on - strand, within BPHYT_RS18880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 4,240,875 - -0.3 4,240,909 + -2.1 4,240,930 + -2.6 4,240,930 + -3.3 4,240,930 + -1.4 4,240,931 - +0.8 4,241,000 - -3.2 4,241,065 + BPHYT_RS18870 0.17 -1.1 4,241,065 + BPHYT_RS18870 0.17 -0.2 4,241,066 - BPHYT_RS18870 0.17 -0.1 4,241,378 - BPHYT_RS18870 0.57 -0.7 4,241,476 + BPHYT_RS18870 0.69 -2.0 4,241,477 - BPHYT_RS18870 0.69 -1.9 4,241,582 - BPHYT_RS18870 0.83 -2.9 4,241,701 + -2.1 4,241,701 + -1.6 4,241,701 + -1.2 4,241,702 - -2.0 4,241,735 + -1.4 4,241,736 - -0.1 4,241,736 - -1.6 4,242,175 + BPHYT_RS18875 0.59 -1.0 4,242,176 - BPHYT_RS18875 0.59 -0.9 4,242,274 + BPHYT_RS18875 0.72 -2.5 4,242,274 + BPHYT_RS18875 0.72 -1.7 4,242,275 - BPHYT_RS18875 0.72 -1.9 4,242,511 - -1.0 4,242,511 - -1.4 4,242,574 - -1.6 4,242,574 - -2.4 4,242,574 - -2.5 4,242,909 + BPHYT_RS18880 0.26 -2.6 4,242,909 + BPHYT_RS18880 0.26 -0.4 4,242,909 + BPHYT_RS18880 0.26 -1.9 4,242,910 - BPHYT_RS18880 0.27 -2.1 4,242,987 + BPHYT_RS18880 0.32 -2.0 4,242,987 + BPHYT_RS18880 0.32 -0.9 4,242,987 + BPHYT_RS18880 0.32 -2.0 4,243,140 + BPHYT_RS18880 0.42 -0.3 4,243,140 + BPHYT_RS18880 0.42 -0.3 4,243,140 + BPHYT_RS18880 0.42 -2.0 4,243,176 + BPHYT_RS18880 0.44 -1.1 4,243,176 + BPHYT_RS18880 0.44 -0.4 4,243,176 + BPHYT_RS18880 0.44 -0.6 4,243,197 + BPHYT_RS18880 0.46 +0.6 4,243,198 - BPHYT_RS18880 0.46 -1.2 4,243,203 + BPHYT_RS18880 0.46 -2.4 4,243,203 + BPHYT_RS18880 0.46 -1.1 4,243,203 + BPHYT_RS18880 0.46 -2.2 4,243,204 - BPHYT_RS18880 0.46 +0.2 4,243,333 - BPHYT_RS18880 0.54 -4.2 4,243,410 + BPHYT_RS18880 0.60 -1.7 4,243,410 + BPHYT_RS18880 0.60 -2.0 4,243,411 - BPHYT_RS18880 0.60 -1.7 4,243,411 - BPHYT_RS18880 0.60 -1.5
Or see this region's nucleotide sequence