Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17685 and BPHYT_RS17690 are separated by 229 nucleotides BPHYT_RS17690 and BPHYT_RS17695 overlap by 4 nucleotides BPHYT_RS17695 and BPHYT_RS17700 are separated by 79 nucleotides BPHYT_RS17700 and BPHYT_RS17705 are separated by 113 nucleotides
BPHYT_RS17685: BPHYT_RS17685 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 3,996,480 to 3,997,232
_RS17685
BPHYT_RS17690: BPHYT_RS17690 - imidazole glycerol phosphate synthase, at 3,997,462 to 3,998,103
_RS17690
BPHYT_RS17695: BPHYT_RS17695 - membrane protein, at 3,998,100 to 3,998,720
_RS17695
BPHYT_RS17700: BPHYT_RS17700 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) , at 3,998,800 to 3,999,387
_RS17700
BPHYT_RS17705: BPHYT_RS17705 - histidinol-phosphate aminotransferase, at 3,999,501 to 4,000,571
_RS17705
Position (kb)
3998
3999 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 3997.188 kb on + strand at 3997.188 kb on + strand at 3997.188 kb on + strand at 3997.189 kb on - strand at 3997.232 kb on + strand at 3997.232 kb on + strand at 3997.233 kb on - strand at 3997.233 kb on - strand at 3997.233 kb on - strand at 3997.233 kb on - strand at 3997.233 kb on - strand at 3997.334 kb on - strand at 3997.337 kb on - strand at 3997.337 kb on - strand at 3997.387 kb on + strand at 3997.387 kb on + strand at 3997.388 kb on - strand at 3997.410 kb on + strand at 3997.411 kb on - strand at 3997.411 kb on - strand at 3997.411 kb on - strand at 3997.548 kb on + strand, within BPHYT_RS17690 at 3997.583 kb on + strand, within BPHYT_RS17690 at 3997.583 kb on + strand, within BPHYT_RS17690 at 3997.583 kb on + strand, within BPHYT_RS17690 at 3997.583 kb on + strand, within BPHYT_RS17690 at 3997.628 kb on + strand, within BPHYT_RS17690 at 3997.628 kb on + strand, within BPHYT_RS17690 at 3997.628 kb on + strand, within BPHYT_RS17690 at 3997.628 kb on + strand, within BPHYT_RS17690 at 3997.629 kb on - strand, within BPHYT_RS17690 at 3997.629 kb on - strand, within BPHYT_RS17690 at 3997.629 kb on - strand, within BPHYT_RS17690 at 3997.631 kb on + strand, within BPHYT_RS17690 at 3997.632 kb on - strand, within BPHYT_RS17690 at 3997.646 kb on + strand, within BPHYT_RS17690 at 3998.112 kb on - strand at 3998.199 kb on - strand, within BPHYT_RS17695 at 3998.199 kb on - strand, within BPHYT_RS17695 at 3998.302 kb on + strand, within BPHYT_RS17695 at 3998.303 kb on - strand, within BPHYT_RS17695 at 3998.303 kb on - strand, within BPHYT_RS17695 at 3998.303 kb on - strand, within BPHYT_RS17695 at 3998.303 kb on - strand, within BPHYT_RS17695 at 3998.327 kb on - strand, within BPHYT_RS17695 at 3998.612 kb on + strand, within BPHYT_RS17695 at 3998.612 kb on + strand, within BPHYT_RS17695 at 3998.613 kb on - strand, within BPHYT_RS17695 at 3998.613 kb on - strand, within BPHYT_RS17695 at 3998.613 kb on - strand, within BPHYT_RS17695 at 3998.699 kb on + strand at 3998.700 kb on - strand at 3998.765 kb on + strand at 3998.779 kb on + strand at 3998.802 kb on - strand at 3998.802 kb on - strand at 3999.104 kb on + strand, within BPHYT_RS17700 at 3999.105 kb on - strand, within BPHYT_RS17700 at 3999.132 kb on + strand, within BPHYT_RS17700 at 3999.133 kb on - strand, within BPHYT_RS17700 at 3999.133 kb on - strand, within BPHYT_RS17700 at 3999.175 kb on - strand, within BPHYT_RS17700 at 3999.175 kb on - strand, within BPHYT_RS17700 at 3999.408 kb on + strand at 3999.409 kb on - strand at 3999.409 kb on - strand at 3999.409 kb on - strand at 3999.422 kb on + strand at 3999.422 kb on + strand at 3999.423 kb on - strand at 3999.423 kb on - strand at 3999.453 kb on + strand at 3999.453 kb on + strand at 3999.454 kb on - strand at 3999.454 kb on - strand at 3999.600 kb on - strand at 3999.600 kb on - strand at 3999.633 kb on + strand, within BPHYT_RS17705 at 3999.634 kb on - strand, within BPHYT_RS17705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 3,997,188 + -5.4 3,997,188 + -4.2 3,997,188 + -0.7 3,997,189 - -3.6 3,997,232 + -3.1 3,997,232 + -4.6 3,997,233 - -3.6 3,997,233 - -2.1 3,997,233 - -4.9 3,997,233 - -5.2 3,997,233 - -2.5 3,997,334 - -0.8 3,997,337 - -0.7 3,997,337 - +0.1 3,997,387 + +0.1 3,997,387 + +0.4 3,997,388 - -2.3 3,997,410 + -1.6 3,997,411 - +0.3 3,997,411 - -0.7 3,997,411 - -0.1 3,997,548 + BPHYT_RS17690 0.13 -6.9 3,997,583 + BPHYT_RS17690 0.19 -4.7 3,997,583 + BPHYT_RS17690 0.19 -3.7 3,997,583 + BPHYT_RS17690 0.19 -6.2 3,997,583 + BPHYT_RS17690 0.19 -3.0 3,997,628 + BPHYT_RS17690 0.26 -1.8 3,997,628 + BPHYT_RS17690 0.26 -4.3 3,997,628 + BPHYT_RS17690 0.26 -6.8 3,997,628 + BPHYT_RS17690 0.26 -4.5 3,997,629 - BPHYT_RS17690 0.26 -3.1 3,997,629 - BPHYT_RS17690 0.26 -2.2 3,997,629 - BPHYT_RS17690 0.26 -4.2 3,997,631 + BPHYT_RS17690 0.26 -5.9 3,997,632 - BPHYT_RS17690 0.26 -1.5 3,997,646 + BPHYT_RS17690 0.29 -4.5 3,998,112 - +0.3 3,998,199 - BPHYT_RS17695 0.16 +0.6 3,998,199 - BPHYT_RS17695 0.16 -0.8 3,998,302 + BPHYT_RS17695 0.33 -1.7 3,998,303 - BPHYT_RS17695 0.33 -1.2 3,998,303 - BPHYT_RS17695 0.33 -1.1 3,998,303 - BPHYT_RS17695 0.33 +1.8 3,998,303 - BPHYT_RS17695 0.33 -1.6 3,998,327 - BPHYT_RS17695 0.37 -0.7 3,998,612 + BPHYT_RS17695 0.82 -3.1 3,998,612 + BPHYT_RS17695 0.82 -2.6 3,998,613 - BPHYT_RS17695 0.83 +0.0 3,998,613 - BPHYT_RS17695 0.83 -0.4 3,998,613 - BPHYT_RS17695 0.83 -1.2 3,998,699 + -2.1 3,998,700 - -0.6 3,998,765 + -1.9 3,998,779 + -3.3 3,998,802 - +0.0 3,998,802 - +0.5 3,999,104 + BPHYT_RS17700 0.52 -1.3 3,999,105 - BPHYT_RS17700 0.52 -5.7 3,999,132 + BPHYT_RS17700 0.56 -2.3 3,999,133 - BPHYT_RS17700 0.57 -0.8 3,999,133 - BPHYT_RS17700 0.57 -0.8 3,999,175 - BPHYT_RS17700 0.64 -0.8 3,999,175 - BPHYT_RS17700 0.64 -1.4 3,999,408 + -3.6 3,999,409 - -0.2 3,999,409 - -2.8 3,999,409 - +0.4 3,999,422 + -1.6 3,999,422 + -6.0 3,999,423 - +0.9 3,999,423 - +0.1 3,999,453 + -2.6 3,999,453 + -3.9 3,999,454 - -0.1 3,999,454 - -2.8 3,999,600 - +0.1 3,999,600 - -1.8 3,999,633 + BPHYT_RS17705 0.12 -1.3 3,999,634 - BPHYT_RS17705 0.12 +0.8
Or see this region's nucleotide sequence