Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16555 and BPHYT_RS16560 are separated by 59 nucleotides BPHYT_RS16560 and BPHYT_RS16565 are separated by 140 nucleotides
BPHYT_RS16555: BPHYT_RS16555 - cation transporter, at 3,751,881 to 3,752,774
_RS16555
BPHYT_RS16560: BPHYT_RS16560 - apolipoprotein N-acyltransferase, at 3,752,834 to 3,754,582
_RS16560
BPHYT_RS16565: BPHYT_RS16565 - peptidase, at 3,754,723 to 3,755,481
_RS16565
Position (kb) 3752
3753
3754
3755 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3751.837 kb on + strand at 3751.893 kb on + strand at 3752.163 kb on + strand, within BPHYT_RS16555 at 3752.163 kb on + strand, within BPHYT_RS16555 at 3752.163 kb on + strand, within BPHYT_RS16555 at 3752.163 kb on + strand, within BPHYT_RS16555 at 3752.489 kb on + strand, within BPHYT_RS16555 at 3752.490 kb on - strand, within BPHYT_RS16555 at 3752.924 kb on + strand at 3754.580 kb on + strand at 3754.690 kb on - strand at 3754.741 kb on - strand at 3754.753 kb on - strand at 3754.753 kb on - strand at 3754.803 kb on + strand, within BPHYT_RS16565 at 3755.192 kb on + strand, within BPHYT_RS16565 at 3755.192 kb on + strand, within BPHYT_RS16565 at 3755.192 kb on + strand, within BPHYT_RS16565 at 3755.192 kb on + strand, within BPHYT_RS16565 at 3755.192 kb on + strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.193 kb on - strand, within BPHYT_RS16565 at 3755.201 kb on + strand, within BPHYT_RS16565 at 3755.201 kb on + strand, within BPHYT_RS16565 at 3755.201 kb on + strand, within BPHYT_RS16565 at 3755.201 kb on + strand, within BPHYT_RS16565 at 3755.202 kb on - strand, within BPHYT_RS16565 at 3755.202 kb on - strand, within BPHYT_RS16565 at 3755.202 kb on - strand, within BPHYT_RS16565 at 3755.202 kb on - strand, within BPHYT_RS16565 at 3755.202 kb on - strand, within BPHYT_RS16565 at 3755.438 kb on - strand at 3755.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 3,751,837 + +0.5 3,751,893 + -2.2 3,752,163 + BPHYT_RS16555 0.32 -2.5 3,752,163 + BPHYT_RS16555 0.32 -0.4 3,752,163 + BPHYT_RS16555 0.32 +0.2 3,752,163 + BPHYT_RS16555 0.32 -1.0 3,752,489 + BPHYT_RS16555 0.68 -0.4 3,752,490 - BPHYT_RS16555 0.68 -2.0 3,752,924 + +0.3 3,754,580 + -0.1 3,754,690 - +0.3 3,754,741 - -0.4 3,754,753 - -0.1 3,754,753 - -0.9 3,754,803 + BPHYT_RS16565 0.11 -2.6 3,755,192 + BPHYT_RS16565 0.62 +0.0 3,755,192 + BPHYT_RS16565 0.62 +0.1 3,755,192 + BPHYT_RS16565 0.62 -0.1 3,755,192 + BPHYT_RS16565 0.62 +1.0 3,755,192 + BPHYT_RS16565 0.62 +0.0 3,755,193 - BPHYT_RS16565 0.62 +1.6 3,755,193 - BPHYT_RS16565 0.62 +0.5 3,755,193 - BPHYT_RS16565 0.62 -3.1 3,755,193 - BPHYT_RS16565 0.62 +0.5 3,755,193 - BPHYT_RS16565 0.62 +0.4 3,755,193 - BPHYT_RS16565 0.62 +1.3 3,755,201 + BPHYT_RS16565 0.63 +1.1 3,755,201 + BPHYT_RS16565 0.63 -0.1 3,755,201 + BPHYT_RS16565 0.63 -0.1 3,755,201 + BPHYT_RS16565 0.63 -0.1 3,755,202 - BPHYT_RS16565 0.63 +0.9 3,755,202 - BPHYT_RS16565 0.63 -1.7 3,755,202 - BPHYT_RS16565 0.63 +0.6 3,755,202 - BPHYT_RS16565 0.63 -0.7 3,755,202 - BPHYT_RS16565 0.63 +1.4 3,755,438 - +0.4 3,755,527 + -1.5
Or see this region's nucleotide sequence