Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13710 and BPHYT_RS13715 are separated by 279 nucleotides BPHYT_RS13715 and BPHYT_RS13720 are separated by 240 nucleotides
BPHYT_RS13710: BPHYT_RS13710 - glycerol acyltransferase, at 3,124,335 to 3,126,272
_RS13710
BPHYT_RS13715: BPHYT_RS13715 - hypothetical protein, at 3,126,552 to 3,127,013
_RS13715
BPHYT_RS13720: BPHYT_RS13720 - O-acetylhomoserine aminocarboxypropyltransferase, at 3,127,254 to 3,128,606
_RS13720
Position (kb) 3126
3127
3128 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3125.824 kb on + strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.830 kb on + strand, within BPHYT_RS13710 at 3125.831 kb on - strand, within BPHYT_RS13710 at 3125.884 kb on + strand, within BPHYT_RS13710 at 3126.101 kb on - strand at 3126.599 kb on + strand, within BPHYT_RS13715 at 3126.600 kb on - strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.602 kb on - strand, within BPHYT_RS13715 at 3126.602 kb on - strand, within BPHYT_RS13715 at 3126.661 kb on + strand, within BPHYT_RS13715 at 3126.661 kb on + strand, within BPHYT_RS13715 at 3126.886 kb on + strand, within BPHYT_RS13715 at 3126.894 kb on + strand, within BPHYT_RS13715 at 3126.993 kb on - strand at 3127.046 kb on - strand at 3127.084 kb on + strand at 3127.085 kb on - strand at 3127.085 kb on - strand at 3127.199 kb on - strand at 3127.199 kb on - strand at 3127.346 kb on + strand at 3127.346 kb on + strand at 3127.347 kb on - strand at 3127.347 kb on - strand at 3127.394 kb on + strand, within BPHYT_RS13720 at 3127.395 kb on - strand, within BPHYT_RS13720 at 3127.416 kb on + strand, within BPHYT_RS13720 at 3127.416 kb on + strand, within BPHYT_RS13720 at 3127.417 kb on - strand, within BPHYT_RS13720 at 3127.559 kb on + strand, within BPHYT_RS13720 at 3127.581 kb on + strand, within BPHYT_RS13720 at 3127.608 kb on + strand, within BPHYT_RS13720 at 3127.858 kb on - strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 3,125,824 + BPHYT_RS13710 0.77 -0.5 3,125,825 - BPHYT_RS13710 0.77 -1.1 3,125,825 - BPHYT_RS13710 0.77 -0.6 3,125,825 - BPHYT_RS13710 0.77 -1.1 3,125,830 + BPHYT_RS13710 0.77 +0.6 3,125,831 - BPHYT_RS13710 0.77 -0.8 3,125,884 + BPHYT_RS13710 0.80 -2.5 3,126,101 - +0.6 3,126,599 + BPHYT_RS13715 0.10 -0.4 3,126,600 - BPHYT_RS13715 0.10 -2.2 3,126,601 + BPHYT_RS13715 0.11 -1.8 3,126,601 + BPHYT_RS13715 0.11 -1.9 3,126,601 + BPHYT_RS13715 0.11 +0.2 3,126,601 + BPHYT_RS13715 0.11 -0.8 3,126,602 - BPHYT_RS13715 0.11 -1.0 3,126,602 - BPHYT_RS13715 0.11 -1.4 3,126,661 + BPHYT_RS13715 0.24 -2.9 3,126,661 + BPHYT_RS13715 0.24 -1.5 3,126,886 + BPHYT_RS13715 0.72 -3.4 3,126,894 + BPHYT_RS13715 0.74 -2.2 3,126,993 - -0.7 3,127,046 - -0.8 3,127,084 + -0.1 3,127,085 - -0.1 3,127,085 - -0.6 3,127,199 - -1.3 3,127,199 - -0.2 3,127,346 + -1.5 3,127,346 + -1.2 3,127,347 - -0.5 3,127,347 - -0.7 3,127,394 + BPHYT_RS13720 0.10 +0.1 3,127,395 - BPHYT_RS13720 0.10 +0.3 3,127,416 + BPHYT_RS13720 0.12 +0.0 3,127,416 + BPHYT_RS13720 0.12 +0.9 3,127,417 - BPHYT_RS13720 0.12 +0.5 3,127,559 + BPHYT_RS13720 0.23 -0.2 3,127,581 + BPHYT_RS13720 0.24 -0.8 3,127,608 + BPHYT_RS13720 0.26 -1.4 3,127,858 - BPHYT_RS13720 0.45 -0.7 3,127,974 + BPHYT_RS13720 0.53 -0.5 3,127,974 + BPHYT_RS13720 0.53 +0.3
Or see this region's nucleotide sequence