Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07850 and BPHYT_RS07855 are separated by 112 nucleotides BPHYT_RS07855 and BPHYT_RS07860 overlap by 4 nucleotides BPHYT_RS07860 and BPHYT_RS07865 are separated by 38 nucleotides
BPHYT_RS07850: BPHYT_RS07850 - catechol 1,2-dioxygenase, at 1,788,580 to 1,789,515
_RS07850
BPHYT_RS07855: BPHYT_RS07855 - benzoate 1,2-dioxygenase subunit alpha, at 1,789,628 to 1,790,986
_RS07855
BPHYT_RS07860: BPHYT_RS07860 - benzoate 1,2-dioxygenase subunit beta, at 1,790,983 to 1,791,471
_RS07860
BPHYT_RS07865: BPHYT_RS07865 - NADH oxidase, at 1,791,510 to 1,792,532
_RS07865
Position (kb) 1789
1790
1791 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1788.760 kb on + strand, within BPHYT_RS07850 at 1788.761 kb on - strand, within BPHYT_RS07850 at 1789.070 kb on - strand, within BPHYT_RS07850 at 1789.148 kb on - strand, within BPHYT_RS07850 at 1789.178 kb on - strand, within BPHYT_RS07850 at 1789.473 kb on + strand at 1789.832 kb on + strand, within BPHYT_RS07855 at 1790.159 kb on + strand, within BPHYT_RS07855 at 1790.250 kb on - strand, within BPHYT_RS07855 at 1790.405 kb on + strand, within BPHYT_RS07855 at 1790.605 kb on - strand, within BPHYT_RS07855 at 1790.605 kb on - strand, within BPHYT_RS07855 at 1791.073 kb on + strand, within BPHYT_RS07860 at 1791.092 kb on - strand, within BPHYT_RS07860 at 1791.160 kb on + strand, within BPHYT_RS07860 at 1791.436 kb on + strand at 1791.436 kb on + strand at 1791.490 kb on - strand at 1791.490 kb on - strand at 1791.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,788,760 + BPHYT_RS07850 0.19 -0.2 1,788,761 - BPHYT_RS07850 0.19 -1.8 1,789,070 - BPHYT_RS07850 0.52 -1.0 1,789,148 - BPHYT_RS07850 0.61 -0.3 1,789,178 - BPHYT_RS07850 0.64 -2.2 1,789,473 + +0.2 1,789,832 + BPHYT_RS07855 0.15 -2.4 1,790,159 + BPHYT_RS07855 0.39 -0.9 1,790,250 - BPHYT_RS07855 0.46 -2.0 1,790,405 + BPHYT_RS07855 0.57 -0.6 1,790,605 - BPHYT_RS07855 0.72 -0.1 1,790,605 - BPHYT_RS07855 0.72 +1.0 1,791,073 + BPHYT_RS07860 0.18 +1.1 1,791,092 - BPHYT_RS07860 0.22 +0.9 1,791,160 + BPHYT_RS07860 0.36 -1.1 1,791,436 + +1.9 1,791,436 + -0.6 1,791,490 - +0.9 1,791,490 - -1.6 1,791,497 + +0.1
Or see this region's nucleotide sequence