Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05790 and BPHYT_RS05795 are separated by 46 nucleotides BPHYT_RS05795 and BPHYT_RS05800 are separated by 107 nucleotides BPHYT_RS05800 and BPHYT_RS05805 are separated by 33 nucleotides
BPHYT_RS05790: BPHYT_RS05790 - hypothetical protein, at 1,316,362 to 1,317,291
_RS05790
BPHYT_RS05795: BPHYT_RS05795 - hypothetical protein, at 1,317,338 to 1,317,700
_RS05795
BPHYT_RS05800: BPHYT_RS05800 - hypothetical protein, at 1,317,808 to 1,318,089
_RS05800
BPHYT_RS05805: BPHYT_RS05805 - prophage tail length tape measure, at 1,318,123 to 1,323,246
_RS05805
Position (kb) 1317
1318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1316.684 kb on - strand, within BPHYT_RS05790 at 1316.834 kb on - strand, within BPHYT_RS05790 at 1316.990 kb on - strand, within BPHYT_RS05790 at 1316.990 kb on - strand, within BPHYT_RS05790 at 1317.397 kb on + strand, within BPHYT_RS05795 at 1317.652 kb on - strand, within BPHYT_RS05795 at 1317.662 kb on + strand, within BPHYT_RS05795 at 1317.663 kb on - strand, within BPHYT_RS05795 at 1317.908 kb on - strand, within BPHYT_RS05800 at 1317.944 kb on - strand, within BPHYT_RS05800 at 1317.958 kb on + strand, within BPHYT_RS05800 at 1318.144 kb on - strand at 1318.144 kb on - strand at 1318.146 kb on + strand at 1318.147 kb on - strand at 1318.497 kb on + strand at 1318.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,316,684 - BPHYT_RS05790 0.35 -0.9 1,316,834 - BPHYT_RS05790 0.51 -0.4 1,316,990 - BPHYT_RS05790 0.68 -0.5 1,316,990 - BPHYT_RS05790 0.68 +1.0 1,317,397 + BPHYT_RS05795 0.16 -1.1 1,317,652 - BPHYT_RS05795 0.87 +0.4 1,317,662 + BPHYT_RS05795 0.89 -1.3 1,317,663 - BPHYT_RS05795 0.90 -2.9 1,317,908 - BPHYT_RS05800 0.35 -1.7 1,317,944 - BPHYT_RS05800 0.48 +2.0 1,317,958 + BPHYT_RS05800 0.53 -0.8 1,318,144 - +0.9 1,318,144 - -1.1 1,318,146 + +0.4 1,318,147 - -1.2 1,318,497 + -0.2 1,318,498 - -0.2
Or see this region's nucleotide sequence