Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05425

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05415 and BPHYT_RS05420 are separated by 47 nucleotidesBPHYT_RS05420 and BPHYT_RS05425 are separated by 254 nucleotidesBPHYT_RS05425 and BPHYT_RS05430 are separated by 192 nucleotides BPHYT_RS05415: BPHYT_RS05415 - 50S ribosomal protein L21, at 1,243,532 to 1,244,005 _RS05415 BPHYT_RS05420: BPHYT_RS05420 - glutathione S-transferase, at 1,244,053 to 1,244,664 _RS05420 BPHYT_RS05425: BPHYT_RS05425 - oxidoreductase, at 1,244,919 to 1,247,021 _RS05425 BPHYT_RS05430: BPHYT_RS05430 - GntR family transcriptional regulator, at 1,247,214 to 1,248,629 _RS05430 Position (kb) 1244 1245 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1at 1244.118 kb on - strand, within BPHYT_RS05420at 1244.118 kb on - strand, within BPHYT_RS05420at 1244.580 kb on + strand, within BPHYT_RS05420at 1244.655 kb on - strandat 1245.026 kb on - strandat 1245.220 kb on - strand, within BPHYT_RS05425at 1245.505 kb on - strand, within BPHYT_RS05425at 1246.394 kb on + strand, within BPHYT_RS05425at 1246.527 kb on + strand, within BPHYT_RS05425at 1246.529 kb on + strand, within BPHYT_RS05425at 1246.627 kb on + strand, within BPHYT_RS05425at 1246.833 kb on + strandat 1246.834 kb on - strandat 1247.220 kb on + strandat 1247.397 kb on + strand, within BPHYT_RS05430at 1247.481 kb on + strand, within BPHYT_RS05430at 1247.481 kb on + strand, within BPHYT_RS05430at 1247.620 kb on - strand, within BPHYT_RS05430at 1247.712 kb on + strand, within BPHYT_RS05430at 1247.716 kb on + strand, within BPHYT_RS05430at 1247.717 kb on - strand, within BPHYT_RS05430at 1247.717 kb on - strand, within BPHYT_RS05430at 1247.717 kb on - strand, within BPHYT_RS05430at 1247.920 kb on + strand, within BPHYT_RS05430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
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1,244,118 - BPHYT_RS05420 0.11 +1.2
1,244,118 - BPHYT_RS05420 0.11 +0.9
1,244,580 + BPHYT_RS05420 0.86 -2.1
1,244,655 - -1.9
1,245,026 - -0.1
1,245,220 - BPHYT_RS05425 0.14 -2.4
1,245,505 - BPHYT_RS05425 0.28 -0.4
1,246,394 + BPHYT_RS05425 0.70 -0.3
1,246,527 + BPHYT_RS05425 0.76 -0.8
1,246,529 + BPHYT_RS05425 0.77 -1.4
1,246,627 + BPHYT_RS05425 0.81 +0.5
1,246,833 + -0.5
1,246,834 - +1.3
1,247,220 + -2.1
1,247,397 + BPHYT_RS05430 0.13 -0.4
1,247,481 + BPHYT_RS05430 0.19 +0.8
1,247,481 + BPHYT_RS05430 0.19 -0.5
1,247,620 - BPHYT_RS05430 0.29 +0.6
1,247,712 + BPHYT_RS05430 0.35 +0.0
1,247,716 + BPHYT_RS05430 0.35 +0.4
1,247,717 - BPHYT_RS05430 0.36 -0.0
1,247,717 - BPHYT_RS05430 0.36 +0.0
1,247,717 - BPHYT_RS05430 0.36 +0.2
1,247,920 + BPHYT_RS05430 0.50 +0.2

Or see this region's nucleotide sequence