Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05415 and BPHYT_RS05420 are separated by 47 nucleotides BPHYT_RS05420 and BPHYT_RS05425 are separated by 254 nucleotides BPHYT_RS05425 and BPHYT_RS05430 are separated by 192 nucleotides
BPHYT_RS05415: BPHYT_RS05415 - 50S ribosomal protein L21, at 1,243,532 to 1,244,005
_RS05415
BPHYT_RS05420: BPHYT_RS05420 - glutathione S-transferase, at 1,244,053 to 1,244,664
_RS05420
BPHYT_RS05425: BPHYT_RS05425 - oxidoreductase, at 1,244,919 to 1,247,021
_RS05425
BPHYT_RS05430: BPHYT_RS05430 - GntR family transcriptional regulator, at 1,247,214 to 1,248,629
_RS05430
Position (kb) 1244
1245
1246
1247
1248 Strain fitness (log2 ratio) -2
-1
0
1 at 1244.118 kb on - strand, within BPHYT_RS05420 at 1244.118 kb on - strand, within BPHYT_RS05420 at 1244.580 kb on + strand, within BPHYT_RS05420 at 1244.655 kb on - strand at 1245.026 kb on - strand at 1245.220 kb on - strand, within BPHYT_RS05425 at 1245.505 kb on - strand, within BPHYT_RS05425 at 1246.394 kb on + strand, within BPHYT_RS05425 at 1246.527 kb on + strand, within BPHYT_RS05425 at 1246.529 kb on + strand, within BPHYT_RS05425 at 1246.627 kb on + strand, within BPHYT_RS05425 at 1246.833 kb on + strand at 1246.834 kb on - strand at 1247.220 kb on + strand at 1247.397 kb on + strand, within BPHYT_RS05430 at 1247.481 kb on + strand, within BPHYT_RS05430 at 1247.481 kb on + strand, within BPHYT_RS05430 at 1247.620 kb on - strand, within BPHYT_RS05430 at 1247.712 kb on + strand, within BPHYT_RS05430 at 1247.716 kb on + strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.717 kb on - strand, within BPHYT_RS05430 at 1247.920 kb on + strand, within BPHYT_RS05430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 1,244,118 - BPHYT_RS05420 0.11 +1.2 1,244,118 - BPHYT_RS05420 0.11 +0.9 1,244,580 + BPHYT_RS05420 0.86 -2.1 1,244,655 - -1.9 1,245,026 - -0.1 1,245,220 - BPHYT_RS05425 0.14 -2.4 1,245,505 - BPHYT_RS05425 0.28 -0.4 1,246,394 + BPHYT_RS05425 0.70 -0.3 1,246,527 + BPHYT_RS05425 0.76 -0.8 1,246,529 + BPHYT_RS05425 0.77 -1.4 1,246,627 + BPHYT_RS05425 0.81 +0.5 1,246,833 + -0.5 1,246,834 - +1.3 1,247,220 + -2.1 1,247,397 + BPHYT_RS05430 0.13 -0.4 1,247,481 + BPHYT_RS05430 0.19 +0.8 1,247,481 + BPHYT_RS05430 0.19 -0.5 1,247,620 - BPHYT_RS05430 0.29 +0.6 1,247,712 + BPHYT_RS05430 0.35 +0.0 1,247,716 + BPHYT_RS05430 0.35 +0.4 1,247,717 - BPHYT_RS05430 0.36 -0.0 1,247,717 - BPHYT_RS05430 0.36 +0.0 1,247,717 - BPHYT_RS05430 0.36 +0.2 1,247,920 + BPHYT_RS05430 0.50 +0.2
Or see this region's nucleotide sequence