Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03865 and BPHYT_RS03870 are separated by 33 nucleotides BPHYT_RS03870 and BPHYT_RS03875 are separated by 69 nucleotides BPHYT_RS03875 and BPHYT_RS03880 are separated by 70 nucleotides
BPHYT_RS03865: BPHYT_RS03865 - FAD-binding molybdopterin dehydrogenase, at 875,700 to 877,223
_RS03865
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
BPHYT_RS03875: BPHYT_RS03875 - dehydrogenase, at 879,693 to 880,259
_RS03875
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.633 kb on - strand, within BPHYT_RS03865 at 877.095 kb on + strand at 877.221 kb on + strand at 877.591 kb on - strand, within BPHYT_RS03870 at 877.591 kb on - strand, within BPHYT_RS03870 at 877.834 kb on - strand, within BPHYT_RS03870 at 877.891 kb on - strand, within BPHYT_RS03870 at 878.133 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.377 kb on - strand, within BPHYT_RS03870 at 878.442 kb on + strand, within BPHYT_RS03870 at 878.459 kb on + strand, within BPHYT_RS03870 at 878.679 kb on + strand, within BPHYT_RS03870 at 878.680 kb on - strand, within BPHYT_RS03870 at 878.828 kb on + strand, within BPHYT_RS03870 at 878.828 kb on + strand, within BPHYT_RS03870 at 879.036 kb on + strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.091 kb on - strand, within BPHYT_RS03870 at 879.129 kb on + strand, within BPHYT_RS03870 at 879.130 kb on - strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.354 kb on + strand, within BPHYT_RS03870 at 879.355 kb on - strand, within BPHYT_RS03870 at 879.631 kb on + strand at 879.764 kb on + strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 880.402 kb on - strand at 880.479 kb on - strand, within BPHYT_RS03880 at 880.542 kb on - strand, within BPHYT_RS03880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 876,269 + BPHYT_RS03865 0.37 -3.5 876,269 + BPHYT_RS03865 0.37 -2.0 876,269 + BPHYT_RS03865 0.37 -0.6 876,633 - BPHYT_RS03865 0.61 +0.3 877,095 + +4.5 877,221 + +0.6 877,591 - BPHYT_RS03870 0.14 -1.3 877,591 - BPHYT_RS03870 0.14 +0.3 877,834 - BPHYT_RS03870 0.24 +0.0 877,891 - BPHYT_RS03870 0.27 -1.2 878,133 + BPHYT_RS03870 0.37 -0.4 878,139 + BPHYT_RS03870 0.37 -2.8 878,139 + BPHYT_RS03870 0.37 +1.2 878,140 - BPHYT_RS03870 0.37 -0.5 878,140 - BPHYT_RS03870 0.37 -0.0 878,140 - BPHYT_RS03870 0.37 -1.3 878,140 - BPHYT_RS03870 0.37 -2.4 878,377 - BPHYT_RS03870 0.47 +0.1 878,442 + BPHYT_RS03870 0.50 -1.1 878,459 + BPHYT_RS03870 0.51 -0.9 878,679 + BPHYT_RS03870 0.60 +0.1 878,680 - BPHYT_RS03870 0.60 -0.6 878,828 + BPHYT_RS03870 0.66 -1.2 878,828 + BPHYT_RS03870 0.66 +0.5 879,036 + BPHYT_RS03870 0.75 -0.9 879,037 - BPHYT_RS03870 0.75 -1.0 879,037 - BPHYT_RS03870 0.75 +0.1 879,091 - BPHYT_RS03870 0.77 -0.6 879,129 + BPHYT_RS03870 0.79 -2.2 879,130 - BPHYT_RS03870 0.79 +0.2 879,132 + BPHYT_RS03870 0.79 -0.9 879,132 + BPHYT_RS03870 0.79 +0.4 879,354 + BPHYT_RS03870 0.89 -1.0 879,355 - BPHYT_RS03870 0.89 +0.0 879,631 + -0.0 879,764 + BPHYT_RS03875 0.13 +0.7 879,765 - BPHYT_RS03875 0.13 +0.5 879,765 - BPHYT_RS03875 0.13 -0.9 879,765 - BPHYT_RS03875 0.13 -1.5 880,402 - +0.3 880,479 - BPHYT_RS03880 0.15 -1.0 880,542 - BPHYT_RS03880 0.22 -0.4
Or see this region's nucleotide sequence