Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03780 and BPHYT_RS03785 are separated by 104 nucleotides BPHYT_RS03785 and BPHYT_RS03790 are separated by 44 nucleotides BPHYT_RS03790 and BPHYT_RS03795 are separated by 326 nucleotides
BPHYT_RS03780: BPHYT_RS03780 - acyl-CoA dehydrogenase, at 852,675 to 853,865
_RS03780
BPHYT_RS03785: BPHYT_RS03785 - IclR family transcriptional regulator, at 853,970 to 854,755
_RS03785
BPHYT_RS03790: BPHYT_RS03790 - diguanylate phosphodiesterase, at 854,800 to 855,633
_RS03790
BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324
_RS03795
Position (kb) 854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 853.870 kb on + strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.871 kb on - strand at 853.961 kb on + strand at 853.961 kb on + strand at 853.962 kb on - strand at 854.142 kb on - strand, within BPHYT_RS03785 at 854.142 kb on - strand, within BPHYT_RS03785 at 854.192 kb on + strand, within BPHYT_RS03785 at 854.192 kb on + strand, within BPHYT_RS03785 at 854.193 kb on - strand, within BPHYT_RS03785 at 854.193 kb on - strand, within BPHYT_RS03785 at 854.570 kb on + strand, within BPHYT_RS03785 at 854.820 kb on - strand at 854.820 kb on - strand at 854.862 kb on - strand at 854.944 kb on + strand, within BPHYT_RS03790 at 855.072 kb on - strand, within BPHYT_RS03790 at 855.080 kb on + strand, within BPHYT_RS03790 at 855.095 kb on + strand, within BPHYT_RS03790 at 855.207 kb on - strand, within BPHYT_RS03790 at 855.247 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.359 kb on - strand, within BPHYT_RS03790 at 855.495 kb on - strand, within BPHYT_RS03790 at 855.635 kb on + strand at 855.635 kb on + strand at 855.635 kb on + strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.642 kb on - strand at 855.676 kb on + strand at 855.677 kb on - strand at 855.714 kb on + strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.848 kb on + strand at 855.848 kb on + strand at 855.849 kb on - strand at 855.849 kb on - strand at 855.871 kb on + strand at 855.871 kb on + strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.448 kb on + strand, within BPHYT_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 853,870 + -0.2 853,871 - -0.2 853,871 - -0.2 853,871 - -0.4 853,871 - -0.3 853,961 + +0.3 853,961 + +1.5 853,962 - +0.3 854,142 - BPHYT_RS03785 0.22 -0.9 854,142 - BPHYT_RS03785 0.22 -1.1 854,192 + BPHYT_RS03785 0.28 -0.5 854,192 + BPHYT_RS03785 0.28 -2.9 854,193 - BPHYT_RS03785 0.28 -2.5 854,193 - BPHYT_RS03785 0.28 -0.7 854,570 + BPHYT_RS03785 0.76 -1.3 854,820 - +0.7 854,820 - +1.8 854,862 - +0.2 854,944 + BPHYT_RS03790 0.17 +2.4 855,072 - BPHYT_RS03790 0.33 +0.0 855,080 + BPHYT_RS03790 0.34 -0.7 855,095 + BPHYT_RS03790 0.35 +0.9 855,207 - BPHYT_RS03790 0.49 +0.9 855,247 + BPHYT_RS03790 0.54 -1.0 855,358 + BPHYT_RS03790 0.67 -0.0 855,358 + BPHYT_RS03790 0.67 -0.3 855,359 - BPHYT_RS03790 0.67 -3.4 855,495 - BPHYT_RS03790 0.83 -0.0 855,635 + -1.6 855,635 + -0.7 855,635 + -2.6 855,636 - +0.7 855,636 - -0.4 855,636 - +1.1 855,636 - +0.0 855,636 - -0.1 855,636 - +1.4 855,636 - +1.1 855,642 - -1.4 855,676 + -2.8 855,677 - +0.8 855,714 + -1.9 855,715 - +1.0 855,715 - +0.8 855,715 - -0.1 855,848 + +1.3 855,848 + +0.2 855,849 - -0.0 855,849 - +0.5 855,871 + +0.2 855,871 + +0.4 855,872 - -1.2 855,872 - +0.1 855,872 - -0.5 855,872 - +0.5 856,110 + BPHYT_RS03795 0.11 -0.4 856,110 + BPHYT_RS03795 0.11 +0.3 856,110 + BPHYT_RS03795 0.11 -0.9 856,448 + BPHYT_RS03795 0.36 -0.6
Or see this region's nucleotide sequence