Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03765 and BPHYT_RS03770 are separated by 134 nucleotides BPHYT_RS03770 and BPHYT_RS03775 are separated by 342 nucleotides BPHYT_RS03775 and BPHYT_RS03780 are separated by 150 nucleotides
BPHYT_RS03765: BPHYT_RS03765 - membrane protein, at 850,720 to 851,106
_RS03765
BPHYT_RS03770: BPHYT_RS03770 - membrane protein, at 851,241 to 851,543
_RS03770
BPHYT_RS03775: BPHYT_RS03775 - peroxidase, at 851,886 to 852,524
_RS03775
BPHYT_RS03780: BPHYT_RS03780 - acyl-CoA dehydrogenase, at 852,675 to 853,865
_RS03780
Position (kb) 851
852
853 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 851.070 kb on + strand at 851.659 kb on + strand at 851.660 kb on - strand at 851.707 kb on + strand at 851.707 kb on + strand at 851.708 kb on - strand at 851.708 kb on - strand at 851.743 kb on - strand at 851.770 kb on - strand at 851.770 kb on - strand at 851.774 kb on + strand at 851.774 kb on + strand at 851.775 kb on - strand at 851.798 kb on + strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.822 kb on - strand at 851.873 kb on + strand at 851.873 kb on + strand at 851.874 kb on - strand at 851.893 kb on + strand at 851.894 kb on - strand at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 852.138 kb on - strand, within BPHYT_RS03775 at 852.301 kb on - strand, within BPHYT_RS03775 at 852.475 kb on - strand at 852.477 kb on - strand at 852.477 kb on - strand at 852.523 kb on - strand at 852.532 kb on + strand at 852.737 kb on + strand at 852.745 kb on + strand at 852.746 kb on - strand at 852.746 kb on - strand at 852.746 kb on - strand at 853.039 kb on + strand, within BPHYT_RS03780 at 853.099 kb on + strand, within BPHYT_RS03780 at 853.100 kb on - strand, within BPHYT_RS03780 at 853.382 kb on - strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 851,070 + -5.5 851,659 + +0.4 851,660 - -0.0 851,707 + +0.8 851,707 + -1.0 851,708 - -0.4 851,708 - -0.4 851,743 - -0.1 851,770 - +0.6 851,770 - +0.6 851,774 + -0.9 851,774 + -0.6 851,775 - +1.0 851,798 + -2.3 851,799 - -2.0 851,799 - +1.4 851,799 - +0.2 851,822 - +0.2 851,873 + -0.2 851,873 + -0.4 851,874 - +1.1 851,893 + +0.7 851,894 - +0.4 851,972 + BPHYT_RS03775 0.13 -0.9 851,972 + BPHYT_RS03775 0.13 -1.3 851,972 + BPHYT_RS03775 0.13 +0.0 851,973 - BPHYT_RS03775 0.14 +0.8 851,973 - BPHYT_RS03775 0.14 -0.0 851,973 - BPHYT_RS03775 0.14 +0.4 852,138 - BPHYT_RS03775 0.39 -0.2 852,301 - BPHYT_RS03775 0.65 +8.7 852,475 - -0.6 852,477 - +0.3 852,477 - -0.3 852,523 - +0.3 852,532 + -2.6 852,737 + +0.1 852,745 + +0.9 852,746 - -0.3 852,746 - -0.5 852,746 - -0.6 853,039 + BPHYT_RS03780 0.31 -1.2 853,099 + BPHYT_RS03780 0.36 +0.8 853,100 - BPHYT_RS03780 0.36 +0.2 853,382 - BPHYT_RS03780 0.59 +0.6 853,495 + BPHYT_RS03780 0.69 +1.6 853,495 + BPHYT_RS03780 0.69 -0.8
Or see this region's nucleotide sequence