Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03515 and BPHYT_RS03520 are separated by 216 nucleotides BPHYT_RS03520 and BPHYT_RS03525 are separated by 73 nucleotides BPHYT_RS03525 and BPHYT_RS03530 are separated by 19 nucleotides BPHYT_RS03530 and BPHYT_RS03535 are separated by 189 nucleotides
BPHYT_RS03515: BPHYT_RS03515 - D-lactate dehydrogenase, at 792,972 to 794,387
_RS03515
BPHYT_RS03520: BPHYT_RS03520 - ATP--cobalamin adenosyltransferase, at 794,604 to 795,158
_RS03520
BPHYT_RS03525: BPHYT_RS03525 - XRE family transcriptional regulator, at 795,232 to 795,564
_RS03525
BPHYT_RS03530: BPHYT_RS03530 - hypothetical protein, at 795,584 to 795,931
_RS03530
BPHYT_RS03535: BPHYT_RS03535 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 796,121 to 797,194
_RS03535
Position (kb) 794
795
796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 793.626 kb on + strand, within BPHYT_RS03515 at 793.720 kb on + strand, within BPHYT_RS03515 at 793.793 kb on - strand, within BPHYT_RS03515 at 793.897 kb on - strand, within BPHYT_RS03515 at 793.990 kb on - strand, within BPHYT_RS03515 at 794.168 kb on - strand, within BPHYT_RS03515 at 794.332 kb on - strand at 794.401 kb on + strand at 794.401 kb on + strand at 794.485 kb on + strand at 794.486 kb on - strand at 794.487 kb on + strand at 794.590 kb on - strand at 795.054 kb on + strand, within BPHYT_RS03520 at 795.054 kb on + strand, within BPHYT_RS03520 at 795.156 kb on + strand at 795.175 kb on - strand at 795.579 kb on + strand at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.697 kb on - strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.902 kb on + strand at 796.008 kb on + strand at 796.025 kb on + strand at 796.026 kb on - strand at 796.092 kb on + strand at 796.093 kb on - strand at 796.110 kb on + strand at 796.123 kb on - strand at 796.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 793,626 + BPHYT_RS03515 0.46 +0.9 793,720 + BPHYT_RS03515 0.53 -0.7 793,793 - BPHYT_RS03515 0.58 -0.8 793,897 - BPHYT_RS03515 0.65 +2.3 793,990 - BPHYT_RS03515 0.72 +2.1 794,168 - BPHYT_RS03515 0.84 +0.7 794,332 - -0.2 794,401 + +0.5 794,401 + +2.0 794,485 + -0.1 794,486 - +1.3 794,487 + -0.4 794,590 - -0.3 795,054 + BPHYT_RS03520 0.81 -2.9 795,054 + BPHYT_RS03520 0.81 -2.2 795,156 + -0.7 795,175 - +0.5 795,579 + -1.1 795,696 + BPHYT_RS03530 0.32 -0.7 795,696 + BPHYT_RS03530 0.32 +0.2 795,696 + BPHYT_RS03530 0.32 +0.2 795,697 - BPHYT_RS03530 0.32 +0.1 795,723 + BPHYT_RS03530 0.40 -0.2 795,723 + BPHYT_RS03530 0.40 -0.8 795,723 + BPHYT_RS03530 0.40 -0.0 795,724 - BPHYT_RS03530 0.40 -0.4 795,724 - BPHYT_RS03530 0.40 +1.8 795,724 - BPHYT_RS03530 0.40 -0.2 795,724 - BPHYT_RS03530 0.40 -0.4 795,724 - BPHYT_RS03530 0.40 +0.5 795,724 - BPHYT_RS03530 0.40 +0.2 795,902 + +0.8 796,008 + -2.3 796,025 + +0.2 796,026 - +0.6 796,092 + -2.7 796,093 - -1.2 796,110 + +0.2 796,123 - +0.9 796,123 - +0.0
Or see this region's nucleotide sequence