Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03490 and BPHYT_RS03495 are separated by 63 nucleotides BPHYT_RS03495 and BPHYT_RS03500 are separated by 37 nucleotides BPHYT_RS03500 and BPHYT_RS03505 are separated by 8 nucleotides
BPHYT_RS03490: BPHYT_RS03490 - pyrroline-5-carboxylate reductase, at 787,321 to 788,136
_RS03490
BPHYT_RS03495: BPHYT_RS03495 - hypothetical protein, at 788,200 to 788,898
_RS03495
BPHYT_RS03500: BPHYT_RS03500 - glycolate oxidase, at 788,936 to 790,162
_RS03500
BPHYT_RS03505: BPHYT_RS03505 - FAD-binding protein, at 790,171 to 791,259
_RS03505
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.174 kb on + strand at 788.174 kb on + strand at 788.211 kb on - strand at 788.211 kb on - strand at 788.332 kb on + strand, within BPHYT_RS03495 at 788.332 kb on + strand, within BPHYT_RS03495 at 788.727 kb on - strand, within BPHYT_RS03495 at 788.824 kb on - strand, within BPHYT_RS03495 at 788.939 kb on + strand at 789.118 kb on - strand, within BPHYT_RS03500 at 789.118 kb on - strand, within BPHYT_RS03500 at 789.256 kb on + strand, within BPHYT_RS03500 at 789.256 kb on + strand, within BPHYT_RS03500 at 789.256 kb on + strand, within BPHYT_RS03500 at 789.394 kb on - strand, within BPHYT_RS03500 at 789.459 kb on + strand, within BPHYT_RS03500 at 789.513 kb on + strand, within BPHYT_RS03500 at 789.591 kb on - strand, within BPHYT_RS03500 at 789.891 kb on + strand, within BPHYT_RS03500 at 790.006 kb on - strand, within BPHYT_RS03500 at 790.050 kb on + strand at 790.975 kb on - strand, within BPHYT_RS03505 at 790.975 kb on - strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.096 kb on + strand, within BPHYT_RS03505 at 791.097 kb on - strand, within BPHYT_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 788,174 + -2.7 788,174 + -1.3 788,211 - +1.7 788,211 - +0.2 788,332 + BPHYT_RS03495 0.19 -2.8 788,332 + BPHYT_RS03495 0.19 -2.2 788,727 - BPHYT_RS03495 0.75 -1.8 788,824 - BPHYT_RS03495 0.89 -1.0 788,939 + +0.4 789,118 - BPHYT_RS03500 0.15 +1.0 789,118 - BPHYT_RS03500 0.15 +2.2 789,256 + BPHYT_RS03500 0.26 -1.7 789,256 + BPHYT_RS03500 0.26 +0.2 789,256 + BPHYT_RS03500 0.26 +1.0 789,394 - BPHYT_RS03500 0.37 +0.6 789,459 + BPHYT_RS03500 0.43 +2.2 789,513 + BPHYT_RS03500 0.47 +0.3 789,591 - BPHYT_RS03500 0.53 +0.5 789,891 + BPHYT_RS03500 0.78 -0.4 790,006 - BPHYT_RS03500 0.87 +1.4 790,050 + -3.2 790,975 - BPHYT_RS03505 0.74 -1.3 790,975 - BPHYT_RS03505 0.74 +0.9 791,096 + BPHYT_RS03505 0.85 -0.0 791,096 + BPHYT_RS03505 0.85 +0.2 791,097 - BPHYT_RS03505 0.85 +0.8
Or see this region's nucleotide sequence