Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03465 and BPHYT_RS03470 are separated by 787 nucleotides BPHYT_RS03470 and BPHYT_RS03475 are separated by 429 nucleotides
BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650
_RS03465
BPHYT_RS03470: BPHYT_RS03470 - LysR family transcriptional regulator, at 782,438 to 783,397
_RS03470
BPHYT_RS03475: BPHYT_RS03475 - catalase, at 783,827 to 785,281
_RS03475
Position (kb) 782
783
784 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 781.443 kb on + strand, within BPHYT_RS03465 at 781.528 kb on - strand, within BPHYT_RS03465 at 781.707 kb on - strand at 781.890 kb on + strand at 782.082 kb on - strand at 782.082 kb on - strand at 782.212 kb on - strand at 782.212 kb on - strand at 782.258 kb on + strand at 782.258 kb on + strand at 782.289 kb on + strand at 782.388 kb on + strand at 782.394 kb on + strand at 782.397 kb on - strand at 782.400 kb on + strand at 782.400 kb on + strand at 782.459 kb on + strand at 782.459 kb on + strand at 782.460 kb on - strand at 782.460 kb on - strand at 782.730 kb on + strand, within BPHYT_RS03470 at 782.732 kb on + strand, within BPHYT_RS03470 at 782.733 kb on - strand, within BPHYT_RS03470 at 782.735 kb on - strand, within BPHYT_RS03470 at 783.166 kb on + strand, within BPHYT_RS03470 at 783.167 kb on - strand, within BPHYT_RS03470 at 783.395 kb on + strand at 783.395 kb on + strand at 783.527 kb on - strand at 783.709 kb on + strand at 783.710 kb on - strand at 783.768 kb on + strand at 783.769 kb on - strand at 783.804 kb on + strand at 783.838 kb on + strand at 783.839 kb on - strand at 783.839 kb on - strand at 784.034 kb on - strand, within BPHYT_RS03475 at 784.034 kb on - strand, within BPHYT_RS03475 at 784.172 kb on + strand, within BPHYT_RS03475 at 784.280 kb on + strand, within BPHYT_RS03475
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 781,443 + BPHYT_RS03465 0.72 -3.4 781,528 - BPHYT_RS03465 0.84 -1.0 781,707 - -0.1 781,890 + -0.6 782,082 - +0.8 782,082 - +0.3 782,212 - +0.1 782,212 - -0.2 782,258 + -0.2 782,258 + -0.7 782,289 + -0.7 782,388 + -0.0 782,394 + +0.8 782,397 - -2.6 782,400 + -0.7 782,400 + -0.2 782,459 + -2.9 782,459 + -0.8 782,460 - -2.6 782,460 - -3.6 782,730 + BPHYT_RS03470 0.30 -2.1 782,732 + BPHYT_RS03470 0.31 -4.5 782,733 - BPHYT_RS03470 0.31 -2.9 782,735 - BPHYT_RS03470 0.31 -4.6 783,166 + BPHYT_RS03470 0.76 -1.1 783,167 - BPHYT_RS03470 0.76 -0.9 783,395 + +0.0 783,395 + +0.6 783,527 - -0.8 783,709 + +0.9 783,710 - +0.8 783,768 + +2.4 783,769 - -0.9 783,804 + -0.2 783,838 + +1.0 783,839 - +1.9 783,839 - -0.2 784,034 - BPHYT_RS03475 0.14 +0.6 784,034 - BPHYT_RS03475 0.14 +0.3 784,172 + BPHYT_RS03475 0.24 -1.5 784,280 + BPHYT_RS03475 0.31 +0.0
Or see this region's nucleotide sequence