Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03370 and BPHYT_RS03375 are separated by 15 nucleotides BPHYT_RS03375 and BPHYT_RS03380 overlap by 1 nucleotides BPHYT_RS03380 and BPHYT_RS03385 are separated by 114 nucleotides BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides
BPHYT_RS03370: BPHYT_RS03370 - NAD(P) transhydrogenase subunit alpha, at 758,679 to 759,821
_RS03370
BPHYT_RS03375: BPHYT_RS03375 - NAD(P) transhydrogenase, at 759,837 to 760,163
_RS03375
BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617
_RS03380
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
Position (kb) 760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 759.367 kb on - strand, within BPHYT_RS03370 at 759.647 kb on + strand, within BPHYT_RS03370 at 759.647 kb on + strand, within BPHYT_RS03370 at 759.819 kb on + strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.891 kb on + strand, within BPHYT_RS03375 at 760.190 kb on + strand at 760.190 kb on + strand at 760.265 kb on - strand at 760.493 kb on - strand, within BPHYT_RS03380 at 760.890 kb on - strand, within BPHYT_RS03380 at 760.989 kb on - strand, within BPHYT_RS03380 at 761.168 kb on + strand, within BPHYT_RS03380 at 761.249 kb on + strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.321 kb on + strand at 761.347 kb on + strand, within BPHYT_RS03380 at 761.468 kb on + strand, within BPHYT_RS03380 at 761.469 kb on - strand, within BPHYT_RS03380 at 761.543 kb on + strand at 761.544 kb on - strand at 761.596 kb on + strand at 761.597 kb on - strand at 761.616 kb on - strand at 761.722 kb on + strand at 761.734 kb on - strand at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days remove 759,367 - BPHYT_RS03370 0.60 -0.9 759,647 + BPHYT_RS03370 0.85 -0.8 759,647 + BPHYT_RS03370 0.85 +0.1 759,819 + +2.3 759,820 - +0.1 759,820 - +0.9 759,820 - -0.4 759,820 - -0.5 759,891 + BPHYT_RS03375 0.17 +0.0 760,190 + -0.1 760,190 + -0.0 760,265 - -0.5 760,493 - BPHYT_RS03380 0.23 -0.4 760,890 - BPHYT_RS03380 0.50 +0.1 760,989 - BPHYT_RS03380 0.57 +2.8 761,168 + BPHYT_RS03380 0.69 -0.6 761,249 + BPHYT_RS03380 0.75 -1.0 761,250 - BPHYT_RS03380 0.75 -0.6 761,250 - BPHYT_RS03380 0.75 +0.1 761,321 + +0.4 761,347 + BPHYT_RS03380 0.81 +0.8 761,468 + BPHYT_RS03380 0.90 +0.6 761,469 - BPHYT_RS03380 0.90 -0.6 761,543 + +0.4 761,544 - +1.6 761,596 + -0.3 761,597 - -0.7 761,616 - -1.1 761,722 + -1.0 761,734 - -0.3 762,306 + BPHYT_RS03385 0.77 -3.7 762,325 + BPHYT_RS03385 0.80 +0.3 762,325 + BPHYT_RS03385 0.80 +0.7 762,432 + +0.7 762,433 - -0.0 762,462 + +0.0 762,463 - +1.3 762,607 + BPHYT_RS03390 0.17 +0.8
Or see this region's nucleotide sequence